Project name: 4cc82362ca038e0 [mutate: NA1A] [mutate: AR1A, VA2A]

Status: done

Started: 2025-03-01 09:54:22
Settings
Chain sequence(s) A: AVDPNANPNVD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AR1A,VA2A
Energy difference between WT (input) and mutated protein (by FoldX) -0.214643 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-2.8867
Maximal score value
-0.271
Average score
-1.8596
Total score value
-20.4559

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.2889 mutated: AR1A
2 A A -1.9524 mutated: VA2A
3 D A -2.8867
4 P A -2.3129
5 N A -2.4229
6 A A -1.5806
7 N A -1.8712
8 P A -1.7777
9 N A -1.4988
10 V A -0.2710
11 D A -1.5928
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Laboratory of Theory of Biopolymers 2018