Project name: MS2 [mutate: VY8A]

Status: done

Started: 2025-08-08 23:17:41
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Chain sequence(s) A: ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAARRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VY8A
Energy difference between WT (input) and mutated protein (by FoldX) 0.940378 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:47)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:49)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-2.4547
Maximal score value
2.7428
Average score
-0.294
Total score value
-37.9245

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.3097
2 S A -0.6618
3 N A -1.1694
4 F A -0.1428
5 T A -0.6570
6 Q A -0.5862
7 F A 0.6590
8 Y A 1.1507 mutated: VY8A
9 L A 0.9025
10 V A -0.0528
11 D A -1.9921
12 N A -2.3385
13 G A -1.9111
14 G A -1.5260
15 T A -1.0903
16 G A -1.3955
17 D A -1.1771
18 V A 0.0639
19 T A 0.5343
20 V A 0.0000
21 A A -0.2170
22 P A -0.2982
23 S A -0.3869
24 N A -0.3638
25 F A 1.0488
26 A A 0.0067
27 N A -0.9367
28 G A -0.3052
29 V A 0.4761
30 A A 0.0000
31 E A -0.0657
32 W A 0.0000
33 I A -0.5190
34 S A 0.0000
35 S A -1.1595
36 N A -1.9391
37 S A -1.6591
38 R A -2.1791
39 S A -1.0976
40 Q A -1.5904
41 A A -1.4289
42 Y A -0.2770
43 K A -0.5143
44 V A 0.0000
45 T A -0.2575
46 C A 0.6493
47 S A 0.0000
48 V A 0.3242
49 R A -1.6558
50 Q A -2.2077
51 S A -1.4726
52 S A -1.1893
53 A A -1.5028
54 Q A -1.3571
55 N A -1.4012
56 R A -1.3491
57 K A -1.2281
58 Y A -0.2060
59 T A -0.5474
60 I A -0.1871
61 K A -0.8126
62 V A 0.3105
63 E A 0.0815
64 V A 0.4651
65 P A 0.0000
66 K A -0.3368
67 V A 1.3337
68 A A 0.1056
69 T A -0.0803
70 Q A -0.2084
71 T A 0.3618
72 V A 1.3003
73 G A 0.0408
74 G A -0.0396
75 V A 1.1504
76 E A -0.3319
77 L A 1.0190
78 P A 0.6174
79 V A 1.3240
80 A A 0.1695
81 A A -0.6321
82 R A -1.7606
83 R A -0.9225
84 S A -0.0424
85 Y A 0.8207
86 L A 0.6981
87 N A -0.8314
88 M A -0.6713
89 E A -1.5585
90 L A -0.4107
91 T A -0.9375
92 I A 0.0000
93 P A -0.3545
94 I A 0.2551
95 F A 1.4635
96 A A 0.0668
97 T A -0.7518
98 N A -1.6828
99 S A -1.4526
100 D A -1.0178
101 C A -0.8293
102 E A -1.3448
103 L A 0.2218
104 I A 0.4286
105 V A 0.8711
106 K A -0.5842
107 A A 0.3784
108 M A 0.5121
109 Q A -0.7381
110 G A -0.4439
111 L A 1.1796
112 L A 0.6394
113 K A -1.8439
114 D A -2.4547
115 G A -1.6640
116 N A -0.8642
117 P A 0.4943
118 I A 1.6185
119 P A 0.6017
120 S A 0.1114
121 A A 0.0000
122 I A 1.9952
123 A A 0.4724
124 A A -0.0843
125 N A -0.6973
126 S A 0.2202
127 G A 0.9567
128 I A 2.7428
129 Y A 2.1263
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Laboratory of Theory of Biopolymers 2018