Project name: Acidic peptide_2

Status: done

Started: 2026-06-25 06:55:31
Settings
Chain sequence(s) A: EDEDEDEDEDED
B: EDEDEDEDEDED
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-7.2946
Maximal score value
-3.0702
Average score
-5.1951
Total score value
-124.6814

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -3.4573
2 D A -4.3078
3 E A -4.8254
4 D A -5.0540
5 E A -5.0427
6 D A -5.2211
7 E A -5.4693
8 D A -7.1411
9 E A -6.3443
10 D A -7.2946
11 E A -4.8882
12 D A -4.0260
1 E B -3.0702
2 D B -3.8564
3 E B -4.4048
4 D B -4.6051
5 E B -4.6629
6 D B -5.4830
7 E B -5.4838
8 D B -7.0230
9 E B -6.7434
10 D B -7.2290
11 E B -5.0386
12 D B -4.0094
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Laboratory of Theory of Biopolymers 2018