Project name: query_structure

Status: done

Started: 2026-03-17 01:20:19
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDANSWYVTYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAHYWSTWYSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:24)
Show buried residues

Minimal score value
-2.7744
Maximal score value
2.1799
Average score
-0.1886
Total score value
-16.9779

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.5724
2 S A 0.5562
3 S A 0.6984
4 V A 0.0457
5 P A 0.0000
6 T A -1.7665
7 K A -2.6383
8 L A 0.0000
9 E A -1.9308
10 V A 0.0951
11 V A 1.5267
12 A A 0.8900
13 A A 0.3004
14 T A -0.3806
15 P A -0.8091
16 T A -0.5296
17 S A -0.3158
18 L A 0.0000
19 L A 0.7347
20 I A 0.0000
21 S A -0.8096
22 W A 0.0000
23 D A -2.7744
24 A A -1.1615
25 N A -0.5388
26 S A 0.7752
27 W A 1.7615
28 Y A 2.1799
29 V A 0.0000
30 T A 1.2704
31 Y A 1.0446
32 Y A 0.0000
33 R A -0.3013
34 I A 0.0000
35 T A 0.0000
36 Y A -0.3057
37 G A 0.0000
38 E A -1.3048
39 T A -1.2128
40 G A -1.2306
41 G A -1.3583
42 N A -1.5415
43 S A -0.8431
44 P A -0.3159
45 V A 0.4520
46 Q A -0.8344
47 E A -1.6204
48 F A -0.6319
49 T A -0.0637
50 V A 0.3948
51 P A 0.4444
52 Y A 1.4469
53 S A 0.5001
54 S A 0.0517
55 S A -0.5066
56 T A -0.2656
57 A A 0.0000
58 T A 0.3053
59 I A 0.0000
60 S A -0.4724
61 G A -0.6862
62 L A 0.0000
63 S A -0.8376
64 P A -0.9921
65 G A -1.0714
66 V A -0.9280
67 D A -1.8148
68 Y A 0.0000
69 T A -0.7611
70 I A 0.0000
71 T A -0.1640
72 V A 0.0000
73 Y A 0.3038
74 A A 0.0000
75 H A 0.9654
76 Y A 1.5630
77 W A 1.5039
78 S A 0.5559
79 T A 0.6369
80 W A 0.9620
81 Y A 0.6185
82 S A 0.1596
83 P A 0.1277
84 I A 0.0962
85 S A -0.5144
86 I A -0.6861
87 N A -1.6962
88 Y A -1.4137
89 R A -2.3139
90 T A -1.1737
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018