Project name: query_structure

Status: done

Started: 2026-03-17 00:43:12
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTHSYMAWYRQAPGKEREWVAAITSWGEKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGYQWQWYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:42)
Show buried residues

Minimal score value
-3.4776
Maximal score value
1.2604
Average score
-0.7275
Total score value
-87.3028

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4454
2 V A -0.7999
3 Q A -0.8457
4 L A 0.0000
5 V A 1.2604
6 E A 0.0000
7 S A -0.5315
8 G A -1.0281
9 G A -0.7770
10 G A -0.0455
11 L A 1.0266
12 V A -0.0086
13 Q A -1.2364
14 A A -1.4303
15 G A -1.3510
16 G A -0.8867
17 S A -1.2176
18 L A -0.9055
19 R A -2.1320
20 L A 0.0000
21 S A -0.3575
22 C A 0.0000
23 A A -0.0144
24 A A 0.0000
25 S A -0.5854
26 G A -0.9969
27 F A -0.6134
28 P A -0.8892
29 V A 0.0000
30 T A -0.5105
31 H A -0.8808
32 S A 0.0000
33 Y A -0.3860
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 Y A -0.1893
38 R A 0.0000
39 Q A -1.9763
40 A A -1.9792
41 P A -1.4032
42 G A -1.9685
43 K A -3.3432
44 E A -3.4776
45 R A -2.5368
46 E A -1.6670
47 W A -0.3980
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 T A -0.8804
53 S A -0.6723
54 W A -0.1504
55 G A -1.3821
56 E A -2.4073
57 K A -2.2944
58 T A -0.9645
59 Y A -0.0549
60 Y A -0.5524
61 A A -1.2089
62 D A -2.3813
63 S A -1.7984
64 V A 0.0000
65 K A -2.5629
66 G A -1.8134
67 R A -1.5320
68 F A 0.0000
69 T A -0.7915
70 I A 0.0000
71 S A -0.5137
72 R A -0.9300
73 D A -1.6893
74 N A -1.7463
75 A A -1.4648
76 K A -2.2836
77 N A -1.6589
78 T A -0.9457
79 V A 0.0000
80 Y A -0.6647
81 L A 0.0000
82 Q A -1.2378
83 M A 0.0000
84 N A -1.4722
85 S A -1.2540
86 L A 0.0000
87 K A -2.3830
88 P A -1.9352
89 E A -2.3676
90 D A 0.0000
91 T A -0.9263
92 A A 0.0000
93 V A -0.3622
94 Y A 0.0000
95 Y A -0.0074
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.0588
100 D A -0.6264
101 S A -0.2587
102 G A 0.2489
103 Y A 0.7855
104 Q A -0.2768
105 W A 0.6274
106 Q A -0.4054
107 W A 0.4426
108 Y A 0.0588
109 D A -1.2282
110 Y A -0.3110
111 W A 0.0321
112 G A 0.0674
113 Q A -0.8753
114 G A 0.0000
115 T A -0.5985
116 Q A -1.0774
117 V A 0.0000
118 T A -0.2696
119 V A 0.0000
120 S A -0.7622
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Laboratory of Theory of Biopolymers 2018