| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTHSYMAWYRQAPGKEREWVAAITSWGEKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGYQWQWYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:41)
[INFO] Main: Simulation completed successfully. (00:01:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4454 | |
| 2 | V | A | -0.7999 | |
| 3 | Q | A | -0.8457 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2604 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5315 | |
| 8 | G | A | -1.0281 | |
| 9 | G | A | -0.7770 | |
| 10 | G | A | -0.0455 | |
| 11 | L | A | 1.0266 | |
| 12 | V | A | -0.0086 | |
| 13 | Q | A | -1.2364 | |
| 14 | A | A | -1.4303 | |
| 15 | G | A | -1.3510 | |
| 16 | G | A | -0.8867 | |
| 17 | S | A | -1.2176 | |
| 18 | L | A | -0.9055 | |
| 19 | R | A | -2.1320 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3575 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0144 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5854 | |
| 26 | G | A | -0.9969 | |
| 27 | F | A | -0.6134 | |
| 28 | P | A | -0.8892 | |
| 29 | V | A | 0.0000 | |
| 30 | T | A | -0.5105 | |
| 31 | H | A | -0.8808 | |
| 32 | S | A | 0.0000 | |
| 33 | Y | A | -0.3860 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.1893 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.9763 | |
| 40 | A | A | -1.9792 | |
| 41 | P | A | -1.4032 | |
| 42 | G | A | -1.9685 | |
| 43 | K | A | -3.3432 | |
| 44 | E | A | -3.4776 | |
| 45 | R | A | -2.5368 | |
| 46 | E | A | -1.6670 | |
| 47 | W | A | -0.3980 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -0.8804 | |
| 53 | S | A | -0.6723 | |
| 54 | W | A | -0.1504 | |
| 55 | G | A | -1.3821 | |
| 56 | E | A | -2.4073 | |
| 57 | K | A | -2.2944 | |
| 58 | T | A | -0.9645 | |
| 59 | Y | A | -0.0549 | |
| 60 | Y | A | -0.5524 | |
| 61 | A | A | -1.2089 | |
| 62 | D | A | -2.3813 | |
| 63 | S | A | -1.7984 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5629 | |
| 66 | G | A | -1.8134 | |
| 67 | R | A | -1.5320 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7915 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5137 | |
| 72 | R | A | -0.9300 | |
| 73 | D | A | -1.6893 | |
| 74 | N | A | -1.7463 | |
| 75 | A | A | -1.4648 | |
| 76 | K | A | -2.2836 | |
| 77 | N | A | -1.6589 | |
| 78 | T | A | -0.9457 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6647 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2378 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4722 | |
| 85 | S | A | -1.2540 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.3830 | |
| 88 | P | A | -1.9352 | |
| 89 | E | A | -2.3676 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9263 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.3622 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0074 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.0588 | |
| 100 | D | A | -0.6264 | |
| 101 | S | A | -0.2587 | |
| 102 | G | A | 0.2489 | |
| 103 | Y | A | 0.7855 | |
| 104 | Q | A | -0.2768 | |
| 105 | W | A | 0.6274 | |
| 106 | Q | A | -0.4054 | |
| 107 | W | A | 0.4426 | |
| 108 | Y | A | 0.0588 | |
| 109 | D | A | -1.2282 | |
| 110 | Y | A | -0.3110 | |
| 111 | W | A | 0.0321 | |
| 112 | G | A | 0.0674 | |
| 113 | Q | A | -0.8753 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | -0.5985 | |
| 116 | Q | A | -1.0774 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.2696 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7622 |