Project name: clone54

Status: done

Started: 2026-07-28 07:03:22
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Chain sequence(s) H: EVQLLESGGSLVQPGGSLRLSCAASGFTFYTYTMNWVRQAPGKGLEWVATIYYDGSNKFYADSVKGRFTISRDNSMDTLHLQMNSLRAEDTAVYYCVSAGWLDNWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRTNQGISNDLGWYQQEPGKAPKRLIHSASDLESGVPSRFSGSASGTEFTLTISSLQPEDFATYYCLQYNDYPRTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-2.7218
Maximal score value
1.535
Average score
-0.5737
Total score value
-127.3539

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8627
2 V H -0.9229
3 Q H -1.0591
4 L H 0.0000
5 L H 0.9100
6 E H 0.0000
7 S H -0.1994
8 G H -0.5010
9 G H 0.2518
11 S H 0.7274
12 L H 1.4177
13 V H -0.0367
14 Q H -1.3548
15 P H -1.6417
16 G H -1.4348
17 G H -1.1614
18 S H -1.1795
19 L H -0.8656
20 R H -1.9482
21 L H 0.0000
22 S H -0.4732
23 C H 0.0000
24 A H 0.1739
25 A H 0.0000
26 S H -0.7051
27 G H -0.9632
28 F H -0.0956
29 T H 0.4190
30 F H 0.0000
35 Y H 1.0534
36 T H 0.8713
37 Y H 1.0279
38 T H 0.0000
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6758
45 A H -1.0651
46 P H -0.8413
47 G H -1.5399
48 K H -2.3643
49 G H -1.6227
50 L H 0.0000
51 E H -0.9914
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 T H 0.0000
56 I H 0.0000
57 Y H -0.0049
58 Y H 0.5771
59 D H -1.0351
62 G H -1.0431
63 S H -1.2282
64 N H -1.5793
65 K H -1.0595
66 F H -0.2714
67 Y H -0.6421
68 A H -1.4114
69 D H -2.6285
70 S H -1.7478
71 V H 0.0000
72 K H -2.5189
74 G H -1.6926
75 R H -1.3778
76 F H 0.0000
77 T H -0.8260
78 I H 0.0000
79 S H -0.5618
80 R H -0.6981
81 D H -1.0953
82 N H -0.6802
83 S H -0.2408
84 M H 0.2123
85 D H -0.4473
86 T H 0.0000
87 L H 0.0000
88 H H -0.8531
89 L H 0.0000
90 Q H -1.0991
91 M H 0.0000
92 N H -1.2423
93 S H -1.1974
94 L H 0.0000
95 R H -2.3543
96 A H -1.7338
97 E H -2.2556
98 D H 0.0000
99 T H -0.3947
100 A H 0.0000
101 V H 0.6240
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 S H 0.0000
107 A H 0.0000
108 G H 0.1752
114 W H 0.2612
115 L H 0.0000
116 D H -0.7707
117 N H -0.6860
118 W H -0.5181
119 G H 0.0000
120 Q H -1.1399
121 G H -0.1673
122 T H 0.5661
123 L H 1.5350
124 V H 0.0000
125 T H 0.3160
126 V H 0.0000
127 S H -0.5580
128 S H -0.5641
1 D L -2.5875
2 I L 0.0000
3 Q L -2.3995
4 M L 0.0000
5 T L -1.5023
6 Q L 0.0000
7 S L -0.7741
8 P L -0.7231
9 S L -1.0339
10 S L -1.3351
11 L L -0.9234
12 S L -1.1112
13 A L 0.0000
14 S L -0.1170
15 V L 0.8690
16 G L -0.4164
17 D L -1.2761
18 R L -2.1410
19 V L 0.0000
20 T L -0.5893
21 I L 0.0000
22 T L -0.6901
23 C L 0.0000
24 R L -2.7218
25 T L 0.0000
26 N L -2.5256
27 Q L -2.5868
28 G L -1.9265
29 I L 0.0000
36 S L -1.2102
37 N L -1.4259
38 D L -1.1363
39 L L 0.0000
40 G L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 E L -1.5000
46 P L -1.0997
47 G L -1.6231
48 K L -2.4207
49 A L -1.5613
50 P L 0.0000
51 K L -1.5165
52 R L -0.7845
53 L L 0.0000
54 I L 0.0000
55 H L -0.6021
56 S L -0.6963
57 A L 0.0000
65 S L -0.8684
66 D L -0.9400
67 L L -0.2475
68 E L -0.6542
69 S L -0.5191
70 G L -0.4997
71 V L -0.3102
72 P L -0.3133
74 S L -0.4145
75 R L -0.7282
76 F L 0.0000
77 S L -0.4524
78 G L -0.4409
79 S L -0.6988
80 A L -0.8711
83 S L -0.9281
84 G L -1.3257
85 T L -1.7629
86 E L -1.5864
87 F L 0.0000
88 T L -0.5794
89 L L 0.0000
90 T L -0.6412
91 I L 0.0000
92 S L -1.3883
93 S L -1.0500
94 L L 0.0000
95 Q L -0.7312
96 P L -0.6031
97 E L -1.8379
98 D L 0.0000
99 F L -0.7472
100 A L 0.0000
101 T L 0.0000
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Y L -0.5015
108 N L -1.2794
109 D L -1.2937
114 Y L -0.2848
115 P L -0.8039
116 R L 0.0000
117 T L -0.8564
118 F L -0.4567
119 G L 0.0000
120 Q L -1.6041
121 G L 0.0000
122 T L 0.0000
123 K L -2.2696
124 V L 0.0000
125 E L -1.6834
126 I L 0.5940
127 K L -0.9758
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Laboratory of Theory of Biopolymers 2018