| Chain sequence(s) |
A: GHKGHKG
C: GHKGHKG B: GHKGHKG E: GHKGHKG D: GHKGHKG G: GHKGHKG F: GHKGHKG I: GHKGHKG H: GHKGHKG K: GHKGHKG J: GHKGHKG M: GHKGHKG L: GHKGHKG O: GHKGHKG N: GHKGHKG Q: GHKGHKG P: GHKGHKG S: GHKGHKG R: GHKGHKG T: GHKGHKG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:23:40)
[INFO] Main: Simulation completed successfully. (00:23:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8088 | |
| 2 | H | A | -2.3609 | |
| 3 | K | A | -3.3592 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.0000 | |
| 6 | K | A | -3.5827 | |
| 7 | G | A | -2.3124 | |
| 1 | G | B | -1.9280 | |
| 2 | H | B | -2.5907 | |
| 3 | K | B | -3.7689 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.0000 | |
| 6 | K | B | -3.4639 | |
| 7 | G | B | -2.2782 | |
| 1 | G | C | -2.1045 | |
| 2 | H | C | -2.8819 | |
| 3 | K | C | -4.0841 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.0000 | |
| 6 | K | C | -3.3771 | |
| 7 | G | C | -2.4224 | |
| 1 | G | D | -1.7556 | |
| 2 | H | D | -3.1159 | |
| 3 | K | D | -3.8482 | |
| 4 | G | D | -3.2123 | |
| 5 | H | D | -3.4613 | |
| 6 | K | D | -3.4255 | |
| 7 | G | D | -2.1650 | |
| 1 | G | E | -1.4966 | |
| 2 | H | E | -2.3314 | |
| 3 | K | E | -2.9921 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -2.8681 | |
| 6 | K | E | -2.9671 | |
| 7 | G | E | -1.8081 | |
| 1 | G | F | -1.8248 | |
| 2 | H | F | -2.3551 | |
| 3 | K | F | -3.1101 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | 0.0000 | |
| 6 | K | F | -3.0939 | |
| 7 | G | F | -2.1321 | |
| 1 | G | G | -1.7449 | |
| 2 | H | G | -2.1763 | |
| 3 | K | G | -3.1558 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 0.0000 | |
| 6 | K | G | -3.6876 | |
| 7 | G | G | -2.3288 | |
| 1 | G | H | -1.7494 | |
| 2 | H | H | -2.2838 | |
| 3 | K | H | -3.3365 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | 0.0000 | |
| 6 | K | H | -3.7571 | |
| 7 | G | H | -2.4292 | |
| 1 | G | I | -1.6991 | |
| 2 | H | I | -2.2928 | |
| 3 | K | I | -3.0706 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | 0.0000 | |
| 6 | K | I | -3.2601 | |
| 7 | G | I | -2.0985 | |
| 1 | G | J | -1.6552 | |
| 2 | H | J | -2.0798 | |
| 3 | K | J | -2.8282 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 0.0000 | |
| 6 | K | J | -3.0766 | |
| 7 | G | J | -2.0658 | |
| 1 | G | K | -1.7621 | |
| 2 | H | K | -2.3768 | |
| 3 | K | K | -3.4728 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | 0.0000 | |
| 6 | K | K | -3.9075 | |
| 7 | G | K | -2.4488 | |
| 1 | G | L | -2.0012 | |
| 2 | H | L | -2.8207 | |
| 3 | K | L | -4.1721 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | 0.0000 | |
| 6 | K | L | -4.2117 | |
| 7 | G | L | -2.6609 | |
| 1 | G | M | -1.7081 | |
| 2 | H | M | -2.5081 | |
| 3 | K | M | -3.6182 | |
| 4 | G | M | -2.8863 | |
| 5 | H | M | -3.3032 | |
| 6 | K | M | -3.4211 | |
| 7 | G | M | -2.0826 | |
| 1 | G | N | -1.7676 | |
| 2 | H | N | -2.4647 | |
| 3 | K | N | -3.6679 | |
| 4 | G | N | -3.1681 | |
| 5 | H | N | -3.4019 | |
| 6 | K | N | -3.5312 | |
| 7 | G | N | -2.1259 | |
| 1 | G | O | -1.8619 | |
| 2 | H | O | -2.5500 | |
| 3 | K | O | -3.7208 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | 0.0000 | |
| 6 | K | O | -3.5522 | |
| 7 | G | O | -2.2918 | |
| 1 | G | P | -1.7442 | |
| 2 | H | P | -2.4092 | |
| 3 | K | P | -3.1929 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | 0.0000 | |
| 6 | K | P | -3.0596 | |
| 7 | G | P | -2.0894 | |
| 1 | G | Q | -1.7493 | |
| 2 | H | Q | -2.3203 | |
| 3 | K | Q | -3.2778 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | 0.0000 | |
| 6 | K | Q | -3.5178 | |
| 7 | G | Q | -2.2588 | |
| 1 | G | R | -1.6978 | |
| 2 | H | R | -2.2264 | |
| 3 | K | R | -3.0906 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | 0.0000 | |
| 6 | K | R | -3.0657 | |
| 7 | G | R | -2.1570 | |
| 1 | G | S | -1.6782 | |
| 2 | H | S | -2.1390 | |
| 3 | K | S | -2.7370 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | 0.0000 | |
| 6 | K | S | -2.7362 | |
| 7 | G | S | -1.8656 | |
| 1 | G | T | -1.7160 | |
| 2 | H | T | -2.2403 | |
| 3 | K | T | -3.1711 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | 0.0000 | |
| 6 | K | T | -3.1340 | |
| 7 | G | T | -2.0900 |