Project name: f495a20809afca8

Status: done

Started: 2026-02-11 10:44:41
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Chain sequence(s) A: GHKGHKG
C: GHKGHKG
B: GHKGHKG
E: GHKGHKG
D: GHKGHKG
G: GHKGHKG
F: GHKGHKG
I: GHKGHKG
H: GHKGHKG
K: GHKGHKG
J: GHKGHKG
M: GHKGHKG
L: GHKGHKG
O: GHKGHKG
N: GHKGHKG
Q: GHKGHKG
P: GHKGHKG
S: GHKGHKG
R: GHKGHKG
T: GHKGHKG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:23:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:23:50)
Show buried residues

Minimal score value
-4.2117
Maximal score value
0.0
Average score
-2.0421
Total score value
-285.8934

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8088
2 H A -2.3609
3 K A -3.3592
4 G A 0.0000
5 H A 0.0000
6 K A -3.5827
7 G A -2.3124
1 G B -1.9280
2 H B -2.5907
3 K B -3.7689
4 G B 0.0000
5 H B 0.0000
6 K B -3.4639
7 G B -2.2782
1 G C -2.1045
2 H C -2.8819
3 K C -4.0841
4 G C 0.0000
5 H C 0.0000
6 K C -3.3771
7 G C -2.4224
1 G D -1.7556
2 H D -3.1159
3 K D -3.8482
4 G D -3.2123
5 H D -3.4613
6 K D -3.4255
7 G D -2.1650
1 G E -1.4966
2 H E -2.3314
3 K E -2.9921
4 G E 0.0000
5 H E -2.8681
6 K E -2.9671
7 G E -1.8081
1 G F -1.8248
2 H F -2.3551
3 K F -3.1101
4 G F 0.0000
5 H F 0.0000
6 K F -3.0939
7 G F -2.1321
1 G G -1.7449
2 H G -2.1763
3 K G -3.1558
4 G G 0.0000
5 H G 0.0000
6 K G -3.6876
7 G G -2.3288
1 G H -1.7494
2 H H -2.2838
3 K H -3.3365
4 G H 0.0000
5 H H 0.0000
6 K H -3.7571
7 G H -2.4292
1 G I -1.6991
2 H I -2.2928
3 K I -3.0706
4 G I 0.0000
5 H I 0.0000
6 K I -3.2601
7 G I -2.0985
1 G J -1.6552
2 H J -2.0798
3 K J -2.8282
4 G J 0.0000
5 H J 0.0000
6 K J -3.0766
7 G J -2.0658
1 G K -1.7621
2 H K -2.3768
3 K K -3.4728
4 G K 0.0000
5 H K 0.0000
6 K K -3.9075
7 G K -2.4488
1 G L -2.0012
2 H L -2.8207
3 K L -4.1721
4 G L 0.0000
5 H L 0.0000
6 K L -4.2117
7 G L -2.6609
1 G M -1.7081
2 H M -2.5081
3 K M -3.6182
4 G M -2.8863
5 H M -3.3032
6 K M -3.4211
7 G M -2.0826
1 G N -1.7676
2 H N -2.4647
3 K N -3.6679
4 G N -3.1681
5 H N -3.4019
6 K N -3.5312
7 G N -2.1259
1 G O -1.8619
2 H O -2.5500
3 K O -3.7208
4 G O 0.0000
5 H O 0.0000
6 K O -3.5522
7 G O -2.2918
1 G P -1.7442
2 H P -2.4092
3 K P -3.1929
4 G P 0.0000
5 H P 0.0000
6 K P -3.0596
7 G P -2.0894
1 G Q -1.7493
2 H Q -2.3203
3 K Q -3.2778
4 G Q 0.0000
5 H Q 0.0000
6 K Q -3.5178
7 G Q -2.2588
1 G R -1.6978
2 H R -2.2264
3 K R -3.0906
4 G R 0.0000
5 H R 0.0000
6 K R -3.0657
7 G R -2.1570
1 G S -1.6782
2 H S -2.1390
3 K S -2.7370
4 G S 0.0000
5 H S 0.0000
6 K S -2.7362
7 G S -1.8656
1 G T -1.7160
2 H T -2.2403
3 K T -3.1711
4 G T 0.0000
5 H T 0.0000
6 K T -3.1340
7 G T -2.0900
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Laboratory of Theory of Biopolymers 2018