| Chain sequence(s) |
A: KNNVVIVATGGTIAGAGASSTNSATYSAAKVPVDALIKAVPQVNDLANITGIQALQVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVHTDKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIFAARDVTKGINIHTHAFVSQWGALGTLVEGKPYWFRSSVKKHTNNSEFNIEKIQGDALPGVQIVYGSDNMMPDAYQAFAKAGVKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLRNAEQPDDKYGWIAAHDLNPQKARLLMALALTKTNDAKEIQNMFWNY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:29)
[INFO] Main: Simulation completed successfully. (00:06:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -2.4236 | |
| 2 | N | A | -1.7298 | |
| 3 | N | A | -1.3077 | |
| 4 | V | A | 0.0000 | |
| 5 | V | A | 0.0000 | |
| 6 | I | A | 0.0000 | |
| 7 | V | A | 0.0000 | |
| 8 | A | A | 0.0000 | |
| 9 | T | A | 0.0000 | |
| 10 | G | A | 0.0000 | |
| 11 | G | A | 0.0000 | |
| 12 | T | A | 0.0000 | |
| 13 | I | A | 0.0000 | |
| 14 | A | A | 0.0000 | |
| 15 | G | A | 0.0000 | |
| 16 | A | A | 0.0000 | |
| 17 | G | A | -0.3336 | |
| 18 | A | A | -0.0575 | |
| 19 | S | A | -0.1879 | |
| 20 | S | A | -0.2473 | |
| 21 | T | A | -0.3083 | |
| 22 | N | A | -0.7291 | |
| 23 | S | A | 0.0000 | |
| 24 | A | A | 0.1875 | |
| 25 | T | A | 0.2467 | |
| 26 | Y | A | 1.0172 | |
| 27 | S | A | 0.1461 | |
| 28 | A | A | -0.2784 | |
| 29 | A | A | -0.7651 | |
| 30 | K | A | -1.6350 | |
| 31 | V | A | -0.8023 | |
| 32 | P | A | -0.7923 | |
| 33 | V | A | 0.0000 | |
| 34 | D | A | -1.5280 | |
| 35 | A | A | -1.1363 | |
| 36 | L | A | 0.0000 | |
| 37 | I | A | -1.2950 | |
| 38 | K | A | -2.1766 | |
| 39 | A | A | -1.0989 | |
| 40 | V | A | 0.0000 | |
| 41 | P | A | -1.6391 | |
| 42 | Q | A | -1.8628 | |
| 43 | V | A | 0.0000 | |
| 44 | N | A | -2.3325 | |
| 45 | D | A | -2.6651 | |
| 46 | L | A | -1.6193 | |
| 47 | A | A | 0.0000 | |
| 48 | N | A | -1.6865 | |
| 49 | I | A | -0.7530 | |
| 50 | T | A | -0.2733 | |
| 51 | G | A | -0.2114 | |
| 52 | I | A | 0.0237 | |
| 53 | Q | A | -0.4439 | |
| 54 | A | A | -0.1474 | |
| 55 | L | A | 0.0186 | |
| 56 | Q | A | -0.4312 | |
| 57 | V | A | -0.2172 | |
| 58 | A | A | -0.4841 | |
| 59 | S | A | 0.0000 | |
| 60 | E | A | -1.9348 | |
| 61 | S | A | -0.9649 | |
| 62 | I | A | -0.7566 | |
| 63 | T | A | -1.2152 | |
| 64 | D | A | -1.6198 | |
| 65 | K | A | -2.6409 | |
| 66 | E | A | -1.4008 | |
| 67 | L | A | 0.0000 | |
| 68 | L | A | 0.0000 | |
| 69 | S | A | -1.3301 | |
| 70 | L | A | 0.0000 | |
| 71 | A | A | 0.0000 | |
| 72 | R | A | -1.5696 | |
| 73 | Q | A | -1.0939 | |
| 74 | V | A | 0.0000 | |
| 75 | N | A | 0.0000 | |
| 76 | D | A | -2.5774 | |
| 77 | L | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | K | A | -2.8641 | |
| 80 | K | A | -2.4377 | |
| 81 | P | A | -1.4233 | |
| 82 | S | A | -1.1961 | |
| 83 | V | A | 0.0000 | |
| 84 | N | A | -1.9552 | |
| 85 | G | A | 0.0000 | |
| 86 | V | A | 0.0000 | |
| 87 | V | A | 0.0000 | |
| 88 | I | A | 0.0000 | |
| 89 | T | A | 0.0000 | |
| 90 | H | A | 0.0000 | |
| 91 | G | A | 0.0000 | |
| 92 | T | A | 0.0000 | |
| 93 | D | A | -1.3040 | |
| 94 | T | A | -0.9402 | |
| 95 | M | A | 0.0000 | |
| 96 | E | A | 0.0000 | |
| 97 | E | A | -0.3824 | |
| 98 | T | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | F | A | 0.0000 | |
| 101 | F | A | 0.0000 | |
| 102 | L | A | 0.0000 | |
| 103 | N | A | 0.0000 | |
| 104 | L | A | 0.0000 | |
| 105 | V | A | 0.0000 | |
| 106 | V | A | 0.0000 | |
| 107 | H | A | -2.0974 | |
| 108 | T | A | -2.3762 | |
| 109 | D | A | -3.3967 | |
| 110 | K | A | -2.6107 | |
| 111 | P | A | 0.0000 | |
| 112 | I | A | 0.0000 | |
| 113 | V | A | 0.0000 | |
| 114 | L | A | 0.0000 | |
| 115 | V | A | 0.0000 | |
| 116 | G | A | 0.0000 | |
| 117 | S | A | 0.0000 | |
| 118 | M | A | 0.0000 | |
| 119 | R | A | -0.1066 | |
| 120 | P | A | 0.0000 | |
| 121 | S | A | -0.1793 | |
| 122 | T | A | -0.1364 | |
| 123 | A | A | 0.0000 | |
| 124 | L | A | 0.9389 | |
| 125 | S | A | 0.2249 | |
| 126 | A | A | 0.2197 | |
| 127 | D | A | 0.0000 | |
| 128 | G | A | 0.0000 | |
| 129 | P | A | 0.6084 | |
| 130 | L | A | 1.1329 | |
| 131 | N | A | 0.0000 | |
| 132 | L | A | 0.0000 | |
| 133 | Y | A | 0.1683 | |
| 134 | S | A | 0.0000 | |
| 135 | A | A | 0.0000 | |
| 136 | V | A | 0.0000 | |
| 137 | A | A | 0.0000 | |
| 138 | L | A | 0.0000 | |
| 139 | A | A | 0.0000 | |
| 140 | S | A | -1.2479 | |
| 141 | S | A | -1.9858 | |
| 142 | N | A | -2.5340 | |
| 143 | E | A | -2.9992 | |
| 144 | A | A | 0.0000 | |
| 145 | K | A | -3.5062 | |
| 146 | N | A | -3.3629 | |
| 147 | K | A | -2.1380 | |
| 148 | G | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | M | A | 0.0000 | |
| 151 | V | A | 0.0000 | |
| 152 | L | A | 0.0000 | |
| 153 | M | A | 0.0000 | |
| 154 | N | A | -0.6174 | |
| 155 | D | A | -0.9113 | |
| 156 | S | A | -0.3735 | |
| 157 | I | A | 0.0000 | |
| 158 | F | A | 0.0000 | |
| 159 | A | A | 0.0000 | |
| 160 | A | A | 0.0000 | |
| 161 | R | A | 0.0000 | |
| 162 | D | A | -0.3330 | |
| 163 | V | A | 0.0000 | |
| 164 | T | A | -0.2515 | |
| 165 | K | A | -0.5838 | |
| 166 | G | A | -0.4184 | |
| 167 | I | A | 0.1501 | |
| 168 | N | A | -0.6582 | |
| 169 | I | A | 0.3495 | |
| 170 | H | A | -0.6975 | |
| 171 | T | A | -0.6729 | |
| 172 | H | A | -0.8939 | |
| 173 | A | A | 0.0000 | |
| 174 | F | A | 0.0000 | |
| 175 | V | A | 0.4602 | |
| 176 | S | A | -0.1426 | |
| 177 | Q | A | -0.4836 | |
| 178 | W | A | -0.1908 | |
| 179 | G | A | -0.0536 | |
| 180 | A | A | 0.0076 | |
| 181 | L | A | 0.0000 | |
| 182 | G | A | 0.0000 | |
| 183 | T | A | 0.1678 | |
| 184 | L | A | 0.0000 | |
| 185 | V | A | -0.8643 | |
| 186 | E | A | -1.9003 | |
| 187 | G | A | -1.5532 | |
| 188 | K | A | -1.8034 | |
| 189 | P | A | 0.0000 | |
| 190 | Y | A | 0.7607 | |
| 191 | W | A | 0.8177 | |
| 192 | F | A | 1.2534 | |
| 193 | R | A | -0.6766 | |
| 194 | S | A | -0.5182 | |
| 195 | S | A | -0.1120 | |
| 196 | V | A | 1.0581 | |
| 197 | K | A | -0.1698 | |
| 198 | K | A | -1.3482 | |
| 199 | H | A | -1.7096 | |
| 200 | T | A | 0.0000 | |
| 201 | N | A | -2.8969 | |
| 202 | N | A | -2.7015 | |
| 203 | S | A | 0.0000 | |
| 204 | E | A | -1.4526 | |
| 205 | F | A | 0.0000 | |
| 206 | N | A | -1.7304 | |
| 207 | I | A | 0.0000 | |
| 208 | E | A | -3.1734 | |
| 209 | K | A | -2.8702 | |
| 210 | I | A | -2.1633 | |
| 211 | Q | A | -2.4356 | |
| 212 | G | A | -2.2007 | |
| 213 | D | A | -2.9011 | |
| 214 | A | A | -1.7281 | |
| 215 | L | A | -0.7910 | |
| 216 | P | A | -0.4297 | |
| 217 | G | A | -0.5602 | |
| 218 | V | A | 0.0000 | |
| 219 | Q | A | -0.5059 | |
| 220 | I | A | 0.3651 | |
| 221 | V | A | 0.0000 | |
| 222 | Y | A | 1.0333 | |
| 223 | G | A | 0.0000 | |
| 224 | S | A | -1.1653 | |
| 225 | D | A | -2.3115 | |
| 226 | N | A | -1.7718 | |
| 227 | M | A | -0.5013 | |
| 228 | M | A | -0.1303 | |
| 229 | P | A | -0.8650 | |
| 230 | D | A | -1.7816 | |
| 231 | A | A | -0.9216 | |
| 232 | Y | A | 0.0000 | |
| 233 | Q | A | -2.1225 | |
| 234 | A | A | -1.4023 | |
| 235 | F | A | -0.9570 | |
| 236 | A | A | -1.6074 | |
| 237 | K | A | -2.0885 | |
| 238 | A | A | -1.0557 | |
| 239 | G | A | -1.2739 | |
| 240 | V | A | -0.8366 | |
| 241 | K | A | -1.3617 | |
| 242 | A | A | 0.0000 | |
| 243 | I | A | 0.0000 | |
| 244 | I | A | 0.0000 | |
| 245 | H | A | 0.0000 | |
| 246 | A | A | 0.0000 | |
| 247 | G | A | 0.0000 | |
| 248 | T | A | -0.7461 | |
| 249 | G | A | -0.8163 | |
| 250 | N | A | -1.0949 | |
| 251 | G | A | 0.0000 | |
| 252 | S | A | -1.0852 | |
| 253 | M | A | 0.0000 | |
| 254 | A | A | -0.6973 | |
| 255 | N | A | -1.0162 | |
| 256 | Y | A | 0.0343 | |
| 257 | L | A | 0.0000 | |
| 258 | V | A | 0.0000 | |
| 259 | P | A | -1.3999 | |
| 260 | E | A | -2.2452 | |
| 261 | V | A | 0.0000 | |
| 262 | R | A | -2.9831 | |
| 263 | K | A | -3.6967 | |
| 264 | L | A | 0.0000 | |
| 265 | H | A | -3.0861 | |
| 266 | D | A | -4.0442 | |
| 267 | E | A | -3.9997 | |
| 268 | Q | A | -3.5414 | |
| 269 | G | A | -2.7896 | |
| 270 | L | A | 0.0000 | |
| 271 | Q | A | 0.0000 | |
| 272 | I | A | 0.0000 | |
| 273 | V | A | 0.0000 | |
| 274 | R | A | 0.0000 | |
| 275 | S | A | 0.0000 | |
| 276 | S | A | 0.0000 | |
| 277 | R | A | -1.2103 | |
| 278 | V | A | 0.1830 | |
| 279 | A | A | -0.4067 | |
| 280 | Q | A | -1.0145 | |
| 281 | G | A | -0.2875 | |
| 282 | F | A | 0.5523 | |
| 283 | V | A | 0.0000 | |
| 284 | L | A | 0.7762 | |
| 285 | R | A | -0.6607 | |
| 286 | N | A | -1.7747 | |
| 287 | A | A | -0.7932 | |
| 288 | E | A | -1.2861 | |
| 289 | Q | A | -1.3945 | |
| 290 | P | A | -1.9464 | |
| 291 | D | A | 0.0000 | |
| 292 | D | A | -3.1583 | |
| 293 | K | A | -2.7119 | |
| 294 | Y | A | -1.9284 | |
| 295 | G | A | -1.8333 | |
| 296 | W | A | 0.0000 | |
| 297 | I | A | 0.0000 | |
| 298 | A | A | 0.0000 | |
| 299 | A | A | 0.0000 | |
| 300 | H | A | 0.2365 | |
| 301 | D | A | 0.0794 | |
| 302 | L | A | 0.0000 | |
| 303 | N | A | -0.6022 | |
| 304 | P | A | 0.0000 | |
| 305 | Q | A | -0.4980 | |
| 306 | K | A | 0.0000 | |
| 307 | A | A | 0.0000 | |
| 308 | R | A | -0.5428 | |
| 309 | L | A | 0.0000 | |
| 310 | L | A | 0.0000 | |
| 311 | M | A | 0.0000 | |
| 312 | A | A | 0.0000 | |
| 313 | L | A | 0.0000 | |
| 314 | A | A | 0.0000 | |
| 315 | L | A | 0.0000 | |
| 316 | T | A | -1.0881 | |
| 317 | K | A | -2.1111 | |
| 318 | T | A | -2.0808 | |
| 319 | N | A | -2.5059 | |
| 320 | D | A | -2.5406 | |
| 321 | A | A | -2.3057 | |
| 322 | K | A | -3.3607 | |
| 323 | E | A | -3.3818 | |
| 324 | I | A | 0.0000 | |
| 325 | Q | A | 0.0000 | |
| 326 | N | A | -1.8971 | |
| 327 | M | A | 0.0000 | |
| 328 | F | A | 0.0000 | |
| 329 | W | A | -0.2755 | |
| 330 | N | A | -0.4547 | |
| 331 | Y | A | 0.0000 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine