| Chain sequence(s) |
A: YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKGFA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:01)
[INFO] Main: Simulation completed successfully. (00:02:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Y | A | 0.7082 | |
| 2 | P | A | -0.1847 | |
| 3 | Q | A | -1.1253 | |
| 4 | S | A | -0.7219 | |
| 5 | I | A | 0.0000 | |
| 6 | D | A | -1.0626 | |
| 7 | W | A | 0.0000 | |
| 8 | R | A | -1.4784 | |
| 9 | A | A | -1.3205 | |
| 10 | K | A | -2.0206 | |
| 11 | G | A | -1.3323 | |
| 12 | A | A | 0.0000 | |
| 13 | V | A | -0.5169 | |
| 14 | T | A | 0.0000 | |
| 15 | P | A | -0.6216 | |
| 16 | V | A | -0.7989 | |
| 17 | K | A | -0.9608 | |
| 18 | N | A | -1.5704 | |
| 19 | Q | A | 0.0000 | |
| 20 | G | A | -1.1070 | |
| 21 | A | A | -0.5672 | |
| 22 | C | A | 0.0000 | |
| 23 | G | A | -0.8391 | |
| 24 | S | A | 0.0000 | |
| 25 | C | A | -0.4278 | |
| 26 | W | A | 0.0000 | |
| 27 | A | A | 0.0000 | |
| 28 | F | A | 0.0000 | |
| 29 | S | A | 0.0000 | |
| 30 | T | A | 0.0000 | |
| 31 | I | A | 0.0000 | |
| 32 | A | A | -0.1194 | |
| 33 | T | A | 0.0000 | |
| 34 | V | A | 0.0000 | |
| 35 | E | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | I | A | 0.0000 | |
| 38 | N | A | 0.0000 | |
| 39 | K | A | -0.3113 | |
| 40 | I | A | 0.3560 | |
| 41 | V | A | 1.1652 | |
| 42 | T | A | 0.1590 | |
| 43 | G | A | -0.6206 | |
| 44 | N | A | -1.1413 | |
| 45 | L | A | -0.1718 | |
| 46 | L | A | -0.5032 | |
| 47 | E | A | -1.0547 | |
| 48 | L | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | E | A | 0.0000 | |
| 51 | Q | A | 0.0000 | |
| 52 | E | A | 0.0000 | |
| 53 | L | A | 0.0000 | |
| 54 | V | A | 0.0000 | |
| 55 | D | A | 0.0000 | |
| 56 | C | A | 0.0000 | |
| 57 | D | A | 0.0000 | |
| 58 | K | A | -1.9482 | |
| 59 | H | A | -1.4811 | |
| 60 | S | A | 0.0000 | |
| 61 | Y | A | -0.1740 | |
| 62 | G | A | 0.0000 | |
| 63 | C | A | -1.1268 | |
| 64 | K | A | -1.6309 | |
| 65 | G | A | -0.7175 | |
| 66 | G | A | -0.2375 | |
| 67 | Y | A | 0.5502 | |
| 68 | Q | A | 0.0000 | |
| 69 | T | A | -0.3327 | |
| 70 | T | A | -0.4843 | |
| 71 | S | A | 0.0000 | |
| 72 | L | A | 0.0000 | |
| 73 | Q | A | -0.8595 | |
| 74 | Y | A | -1.1888 | |
| 75 | V | A | 0.0000 | |
| 76 | A | A | 0.0000 | |
| 77 | N | A | -1.8294 | |
| 78 | N | A | -1.7595 | |
| 79 | G | A | 0.0000 | |
| 80 | V | A | 0.0000 | |
| 81 | H | A | 0.0000 | |
| 82 | T | A | -1.2719 | |
| 83 | S | A | -0.9802 | |
| 84 | K | A | -1.7654 | |
| 85 | V | A | -0.8351 | |
| 86 | Y | A | 0.0000 | |
| 87 | P | A | -0.6953 | |
| 88 | Y | A | -0.9055 | |
| 89 | Q | A | -1.2976 | |
| 90 | A | A | -1.4440 | |
| 91 | K | A | -2.2577 | |
| 92 | Q | A | -1.6242 | |
| 93 | Y | A | -1.1209 | |
| 94 | K | A | -1.5771 | |
| 95 | C | A | -1.1963 | |
| 96 | R | A | -1.3644 | |
| 97 | A | A | -1.3390 | |
| 98 | T | A | -1.2382 | |
| 99 | D | A | -2.2164 | |
| 100 | K | A | -1.8592 | |
| 101 | P | A | -1.3711 | |
| 102 | G | A | -1.3551 | |
| 103 | P | A | -1.4668 | |
| 104 | K | A | -2.2961 | |
| 105 | V | A | 0.0000 | |
| 106 | K | A | -1.1565 | |
| 107 | I | A | 0.0000 | |
| 108 | T | A | -0.0096 | |
| 109 | G | A | -0.3775 | |
| 110 | Y | A | -0.4696 | |
| 111 | K | A | -1.6908 | |
| 112 | R | A | -2.0010 | |
| 113 | V | A | 0.0000 | |
| 114 | P | A | -0.9608 | |
| 115 | S | A | -1.0967 | |
| 116 | N | A | -1.4734 | |
| 117 | C | A | -1.1446 | |
| 118 | E | A | -0.9888 | |
| 119 | T | A | -0.3704 | |
| 120 | S | A | -0.4409 | |
| 121 | F | A | 0.0000 | |
| 122 | L | A | 0.0000 | |
| 123 | G | A | -0.1274 | |
| 124 | A | A | -0.4664 | |
| 125 | L | A | 0.0000 | |
| 126 | A | A | -0.5271 | |
| 127 | N | A | -0.9872 | |
| 128 | Q | A | 0.0000 | |
| 129 | P | A | 0.0000 | |
| 130 | L | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | L | A | -0.2317 | |
| 134 | V | A | 0.0000 | |
| 135 | E | A | 0.0000 | |
| 136 | A | A | 0.0000 | |
| 137 | G | A | -1.6550 | |
| 138 | G | A | -1.3891 | |
| 139 | K | A | -1.7525 | |
| 140 | P | A | -1.1638 | |
| 141 | F | A | 0.0000 | |
| 142 | Q | A | -0.8662 | |
| 143 | L | A | 0.1554 | |
| 144 | Y | A | 0.0000 | |
| 145 | K | A | -2.0479 | |
| 146 | S | A | -1.3158 | |
| 147 | G | A | -1.0457 | |
| 148 | V | A | -1.1442 | |
| 149 | F | A | 0.0000 | |
| 150 | D | A | -2.0311 | |
| 151 | G | A | -1.3509 | |
| 152 | P | A | -1.0072 | |
| 153 | C | A | -1.0272 | |
| 154 | G | A | -0.8452 | |
| 155 | T | A | -1.2363 | |
| 156 | K | A | -2.0535 | |
| 157 | L | A | -1.3628 | |
| 158 | D | A | -2.0600 | |
| 159 | H | A | 0.0000 | |
| 160 | A | A | 0.0000 | |
| 161 | V | A | 0.0000 | |
| 162 | T | A | 0.0000 | |
| 163 | A | A | 0.0000 | |
| 164 | V | A | 0.0000 | |
| 165 | G | A | 0.0000 | |
| 166 | Y | A | 0.0000 | |
| 167 | G | A | 0.0000 | |
| 168 | T | A | -1.3109 | |
| 169 | S | A | -1.4983 | |
| 170 | D | A | -2.3604 | |
| 171 | G | A | -1.8396 | |
| 172 | K | A | -1.8770 | |
| 173 | N | A | -1.6041 | |
| 174 | Y | A | -0.8939 | |
| 175 | I | A | 0.0000 | |
| 176 | I | A | 0.0000 | |
| 177 | I | A | 0.0000 | |
| 178 | K | A | 0.0000 | |
| 179 | N | A | 0.0000 | |
| 180 | S | A | 0.0000 | |
| 181 | W | A | -0.9416 | |
| 182 | G | A | 0.0000 | |
| 183 | P | A | -1.7758 | |
| 184 | N | A | -2.2519 | |
| 185 | W | A | 0.0000 | |
| 186 | G | A | -1.8067 | |
| 187 | E | A | -2.1081 | |
| 188 | K | A | -2.5836 | |
| 189 | G | A | 0.0000 | |
| 190 | Y | A | 0.0000 | |
| 191 | M | A | 0.0000 | |
| 192 | R | A | -0.7540 | |
| 193 | L | A | 0.0000 | |
| 194 | K | A | -1.3802 | |
| 195 | R | A | 0.0000 | |
| 196 | Q | A | -1.5136 | |
| 197 | S | A | -1.1497 | |
| 198 | G | A | -1.2559 | |
| 199 | N | A | -1.8264 | |
| 200 | S | A | -1.5121 | |
| 201 | Q | A | -1.6172 | |
| 202 | G | A | 0.0000 | |
| 203 | T | A | 0.0000 | |
| 204 | C | A | 0.0000 | |
| 205 | G | A | 0.0000 | |
| 206 | V | A | 0.0000 | |
| 207 | Y | A | 0.0000 | |
| 208 | K | A | -0.7478 | |
| 209 | S | A | -0.5311 | |
| 210 | S | A | 0.0000 | |
| 211 | Y | A | -0.6658 | |
| 212 | Y | A | -0.3686 | |
| 213 | P | A | 0.0000 | |
| 214 | F | A | 0.8586 | |
| 215 | K | A | 0.7530 | |
| 216 | G | A | 0.6151 | |
| 217 | F | A | 1.6920 | |
| 218 | A | A | 0.8677 |