Project name: Brazikumab

Status: done

Started: 2026-03-23 07:18:47
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNEYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRGYTSSWYPDAFDIWGQGTMVTVSS
L: QSVLTQPPSVSGAPGQRVTISCTGSSSNTGAGYDVHWYQQVPGTAPKLLIYGSGNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTRLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:47)
Show buried residues

Minimal score value
-2.6577
Maximal score value
1.6041
Average score
-0.4907
Total score value
-115.3152

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -0.9895
2 V H 0.1025
3 Q H -0.3706
4 L H 0.0000
5 V H 0.2936
6 E H 0.0000
7 S H -0.4596
8 G H -0.6778
9 G H -0.0633
11 G H 0.6169
12 V H 1.6041
13 V H -0.0007
14 Q H -1.1490
15 P H -1.7771
16 G H -2.0143
17 R H -2.6014
18 S H -1.7665
19 L H -0.7301
20 R H -1.1145
21 L H 0.0000
22 S H -0.3011
23 C H 0.0000
24 A H -0.3607
25 A H 0.0000
26 S H -0.4510
27 G H -0.5074
28 F H -0.1067
29 T H -0.0919
30 F H 0.0000
35 S H -0.8719
36 S H 0.1285
37 Y H 0.2772
38 G H -0.0535
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7329
45 A H -1.1111
46 P H -0.9139
47 G H -1.4893
48 K H -2.2692
49 G H -1.5290
50 L H 0.0000
51 E H -0.9589
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.5350
58 Y H -0.3311
59 D H -1.6169
62 G H -1.3804
63 S H -1.1344
64 N H -1.1879
65 E H -0.9494
66 Y H -0.4168
67 Y H -0.6880
68 A H -1.0955
69 D H -2.3769
70 S H -1.8590
71 V H 0.0000
72 K H -2.5365
74 G H -1.7285
75 R H -1.4176
76 F H 0.0000
77 T H -0.7295
78 I H 0.0000
79 S H -0.5676
80 R H -1.0454
81 D H -1.6535
82 N H -1.8589
83 S H -1.5999
84 K H -2.4414
85 N H -1.9320
86 T H -1.1429
87 L H 0.0000
88 Y H -0.2632
89 L H 0.0000
90 Q H -0.7247
91 M H 0.0000
92 N H -1.5907
93 S H -1.6594
94 L H 0.0000
95 R H -2.2490
96 A H -1.5365
97 E H -2.1733
98 D H 0.0000
99 T H -0.4438
100 A H 0.0000
101 V H 0.3681
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3907
107 D H 0.0000
108 R H -0.5460
109 G H 0.1509
110 Y H 1.0679
111 T H 0.5698
111A S H 0.2883
111B S H 0.5347
112B W H 1.0809
112A Y H 0.8596
112 P H 0.2691
113 D H -0.3168
114 A H 0.0000
115 F H 0.0000
116 D H -0.7737
117 I H -0.0623
118 W H -0.1771
119 G H 0.0000
120 Q H -1.0847
121 G H -0.3030
122 T H 0.0000
123 M H 0.6410
124 V H 0.0000
125 T H 0.3035
126 V H 0.0000
127 S H -0.3978
128 S H -0.2816
1 Q L -1.1966
2 S L -0.7521
3 V L -0.1296
4 L L 0.0000
5 T L -0.2231
6 Q L 0.0000
7 P L -0.4326
8 P L -0.6593
9 S L -0.5933
11 V L -0.0984
12 S L -0.1588
13 G L 0.0000
14 A L -0.2040
15 P L -0.8709
16 G L -1.7148
17 Q L -2.3320
18 R L -2.6577
19 V L 0.0000
20 T L -0.4929
21 I L 0.0000
22 S L -0.3047
23 C L 0.0000
24 T L -0.2710
25 G L -0.2685
26 S L -0.3908
27 S L -0.6173
28 S L -0.1634
29 N L 0.0000
30 T L 0.0000
31 G L -0.9180
35 A L -0.5645
36 G L -0.7024
37 Y L -0.4167
38 D L -0.8281
39 V L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 V L 0.1401
46 P L -0.1559
47 G L -0.4581
48 T L -0.3729
49 A L -0.4242
50 P L 0.0000
51 K L -0.7756
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.7113
56 G L -0.7531
57 S L -0.9172
65 G L -1.1785
66 N L -1.3921
67 R L -1.7411
68 P L -0.9226
69 S L -0.7253
70 G L -0.8651
71 V L -1.0652
72 P L -1.3025
74 D L -2.1541
75 R L -1.4480
76 F L 0.0000
77 S L -0.9975
78 G L -0.7493
79 S L -0.8271
80 K L -1.1130
83 S L -0.8258
84 G L -0.9343
85 T L -0.7441
86 S L -0.6487
87 A L 0.0000
88 S L -0.4244
89 L L 0.0000
90 A L -0.5428
91 I L 0.0000
92 T L -1.7954
93 G L -1.7099
94 L L 0.0000
95 Q L -1.3478
96 A L -1.0308
97 E L -1.9264
98 D L 0.0000
99 E L -1.1732
100 A L 0.0000
101 D L -0.6051
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 S L 0.0000
107 Y L 0.1717
108 D L 0.0000
109 S L 0.2254
110 S L 0.3999
113 L L 0.9809
114 S L 0.4087
115 G L 0.0000
116 W L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.9822
121 G L -0.9779
122 T L 0.0000
123 R L -0.9630
124 L L 0.0000
125 T L -0.1895
126 V L 0.2543
127 L L 1.4419
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Laboratory of Theory of Biopolymers 2018