| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNEYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRGYTSSWYPDAFDIWGQGTMVTVSS
L: QSVLTQPPSVSGAPGQRVTISCTGSSSNTGAGYDVHWYQQVPGTAPKLLIYGSGNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTRLTVL input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:45)
[INFO] Main: Simulation completed successfully. (00:00:47)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -0.9895 | |
| 2 | V | H | 0.1025 | |
| 3 | Q | H | -0.3706 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2936 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.4596 | |
| 8 | G | H | -0.6778 | |
| 9 | G | H | -0.0633 | |
| 11 | G | H | 0.6169 | |
| 12 | V | H | 1.6041 | |
| 13 | V | H | -0.0007 | |
| 14 | Q | H | -1.1490 | |
| 15 | P | H | -1.7771 | |
| 16 | G | H | -2.0143 | |
| 17 | R | H | -2.6014 | |
| 18 | S | H | -1.7665 | |
| 19 | L | H | -0.7301 | |
| 20 | R | H | -1.1145 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3011 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.3607 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.4510 | |
| 27 | G | H | -0.5074 | |
| 28 | F | H | -0.1067 | |
| 29 | T | H | -0.0919 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.8719 | |
| 36 | S | H | 0.1285 | |
| 37 | Y | H | 0.2772 | |
| 38 | G | H | -0.0535 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.7329 | |
| 45 | A | H | -1.1111 | |
| 46 | P | H | -0.9139 | |
| 47 | G | H | -1.4893 | |
| 48 | K | H | -2.2692 | |
| 49 | G | H | -1.5290 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9589 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | W | H | -0.5350 | |
| 58 | Y | H | -0.3311 | |
| 59 | D | H | -1.6169 | |
| 62 | G | H | -1.3804 | |
| 63 | S | H | -1.1344 | |
| 64 | N | H | -1.1879 | |
| 65 | E | H | -0.9494 | |
| 66 | Y | H | -0.4168 | |
| 67 | Y | H | -0.6880 | |
| 68 | A | H | -1.0955 | |
| 69 | D | H | -2.3769 | |
| 70 | S | H | -1.8590 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5365 | |
| 74 | G | H | -1.7285 | |
| 75 | R | H | -1.4176 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7295 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5676 | |
| 80 | R | H | -1.0454 | |
| 81 | D | H | -1.6535 | |
| 82 | N | H | -1.8589 | |
| 83 | S | H | -1.5999 | |
| 84 | K | H | -2.4414 | |
| 85 | N | H | -1.9320 | |
| 86 | T | H | -1.1429 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2632 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7247 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.5907 | |
| 93 | S | H | -1.6594 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2490 | |
| 96 | A | H | -1.5365 | |
| 97 | E | H | -2.1733 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.4438 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.3681 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.3907 | |
| 107 | D | H | 0.0000 | |
| 108 | R | H | -0.5460 | |
| 109 | G | H | 0.1509 | |
| 110 | Y | H | 1.0679 | |
| 111 | T | H | 0.5698 | |
| 111A | S | H | 0.2883 | |
| 111B | S | H | 0.5347 | |
| 112B | W | H | 1.0809 | |
| 112A | Y | H | 0.8596 | |
| 112 | P | H | 0.2691 | |
| 113 | D | H | -0.3168 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.7737 | |
| 117 | I | H | -0.0623 | |
| 118 | W | H | -0.1771 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.0847 | |
| 121 | G | H | -0.3030 | |
| 122 | T | H | 0.0000 | |
| 123 | M | H | 0.6410 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3035 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.3978 | |
| 128 | S | H | -0.2816 | |
| 1 | Q | L | -1.1966 | |
| 2 | S | L | -0.7521 | |
| 3 | V | L | -0.1296 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.2231 | |
| 6 | Q | L | 0.0000 | |
| 7 | P | L | -0.4326 | |
| 8 | P | L | -0.6593 | |
| 9 | S | L | -0.5933 | |
| 11 | V | L | -0.0984 | |
| 12 | S | L | -0.1588 | |
| 13 | G | L | 0.0000 | |
| 14 | A | L | -0.2040 | |
| 15 | P | L | -0.8709 | |
| 16 | G | L | -1.7148 | |
| 17 | Q | L | -2.3320 | |
| 18 | R | L | -2.6577 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.4929 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3047 | |
| 23 | C | L | 0.0000 | |
| 24 | T | L | -0.2710 | |
| 25 | G | L | -0.2685 | |
| 26 | S | L | -0.3908 | |
| 27 | S | L | -0.6173 | |
| 28 | S | L | -0.1634 | |
| 29 | N | L | 0.0000 | |
| 30 | T | L | 0.0000 | |
| 31 | G | L | -0.9180 | |
| 35 | A | L | -0.5645 | |
| 36 | G | L | -0.7024 | |
| 37 | Y | L | -0.4167 | |
| 38 | D | L | -0.8281 | |
| 39 | V | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | V | L | 0.1401 | |
| 46 | P | L | -0.1559 | |
| 47 | G | L | -0.4581 | |
| 48 | T | L | -0.3729 | |
| 49 | A | L | -0.4242 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.7756 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.7113 | |
| 56 | G | L | -0.7531 | |
| 57 | S | L | -0.9172 | |
| 65 | G | L | -1.1785 | |
| 66 | N | L | -1.3921 | |
| 67 | R | L | -1.7411 | |
| 68 | P | L | -0.9226 | |
| 69 | S | L | -0.7253 | |
| 70 | G | L | -0.8651 | |
| 71 | V | L | -1.0652 | |
| 72 | P | L | -1.3025 | |
| 74 | D | L | -2.1541 | |
| 75 | R | L | -1.4480 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.9975 | |
| 78 | G | L | -0.7493 | |
| 79 | S | L | -0.8271 | |
| 80 | K | L | -1.1130 | |
| 83 | S | L | -0.8258 | |
| 84 | G | L | -0.9343 | |
| 85 | T | L | -0.7441 | |
| 86 | S | L | -0.6487 | |
| 87 | A | L | 0.0000 | |
| 88 | S | L | -0.4244 | |
| 89 | L | L | 0.0000 | |
| 90 | A | L | -0.5428 | |
| 91 | I | L | 0.0000 | |
| 92 | T | L | -1.7954 | |
| 93 | G | L | -1.7099 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.3478 | |
| 96 | A | L | -1.0308 | |
| 97 | E | L | -1.9264 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -1.1732 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -0.6051 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | S | L | 0.0000 | |
| 107 | Y | L | 0.1717 | |
| 108 | D | L | 0.0000 | |
| 109 | S | L | 0.2254 | |
| 110 | S | L | 0.3999 | |
| 113 | L | L | 0.9809 | |
| 114 | S | L | 0.4087 | |
| 115 | G | L | 0.0000 | |
| 116 | W | L | 0.0000 | |
| 117 | V | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.9822 | |
| 121 | G | L | -0.9779 | |
| 122 | T | L | 0.0000 | |
| 123 | R | L | -0.9630 | |
| 124 | L | L | 0.0000 | |
| 125 | T | L | -0.1895 | |
| 126 | V | L | 0.2543 | |
| 127 | L | L | 1.4419 |