Project name: Cecropin

Status: done

Started: 2026-04-12 13:38:36
Settings
Chain sequence(s) A: SWLSKTAKKLENSAKKRISEGIAIAIQGGPR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:51)
Show buried residues

Minimal score value
-3.5195
Maximal score value
2.4262
Average score
-0.8298
Total score value
-25.7226

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A 0.4210
2 W A 1.0355
3 L A 1.0436
4 S A -0.3620
5 K A -1.8930
6 T A -1.0698
7 A A -1.3251
8 K A -3.0530
9 K A -2.8708
10 L A -1.5123
11 E A -3.5195
12 N A -3.1488
13 S A -2.3685
14 A A -2.5001
15 K A -3.3154
16 K A -3.4349
17 R A -3.0269
18 I A -0.1101
19 S A -0.8111
20 E A -1.3405
21 G A 0.5086
22 I A 2.2308
23 A A 1.5982
24 I A 2.4262
25 A A 1.8194
26 I A 2.1943
27 Q A 0.1995
28 G A 0.0611
29 G A -0.0986
30 P A -1.2442
31 R A -2.2562
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Laboratory of Theory of Biopolymers 2018