| Chain sequence(s) |
H: EVQLQQSGPELVKPGASVKISCKASGYTFTAYYINWVKQSHGKSLEWIGDINPNNGIINYNHKFKGKASLTVDKSSSTAYMELRSLTSEDSAVYYCAKTGEWTVGYFDVWGTGTMVTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSVSYMYWYQQKPGSSPKPWIYRTSNLASGVPTRFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0008 | |
| 2 | V | H | -1.0299 | |
| 3 | Q | H | -1.9602 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0137 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9341 | |
| 8 | G | H | -0.6804 | |
| 9 | P | H | -0.1905 | |
| 11 | E | H | -0.2236 | |
| 12 | L | H | 0.9306 | |
| 13 | V | H | -0.2216 | |
| 14 | K | H | -1.6985 | |
| 15 | P | H | -1.4081 | |
| 16 | G | H | -1.2440 | |
| 17 | A | H | -1.0256 | |
| 18 | S | H | -1.1760 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.3933 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.7520 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.8074 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3477 | |
| 27 | G | H | -1.1435 | |
| 28 | Y | H | -0.3992 | |
| 29 | T | H | 0.0132 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.9210 | |
| 36 | A | H | 0.0312 | |
| 37 | Y | H | 0.3469 | |
| 38 | Y | H | 0.6331 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8799 | |
| 45 | S | H | -1.4216 | |
| 46 | H | H | -1.8425 | |
| 47 | G | H | -1.7981 | |
| 48 | K | H | -2.4460 | |
| 49 | S | H | -1.4280 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9584 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | D | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | 0.0292 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -1.9416 | |
| 62 | N | H | -1.5298 | |
| 63 | G | H | -0.2748 | |
| 64 | I | H | 1.4649 | |
| 65 | I | H | 1.2713 | |
| 66 | N | H | 0.2299 | |
| 67 | Y | H | -0.7623 | |
| 68 | N | H | -1.5321 | |
| 69 | H | H | -2.4814 | |
| 70 | K | H | -2.8179 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.8303 | |
| 74 | G | H | -1.9188 | |
| 75 | K | H | -1.7775 | |
| 76 | A | H | 0.0000 | |
| 77 | S | H | -0.6822 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | 0.0068 | |
| 80 | V | H | -0.8512 | |
| 81 | D | H | -1.5303 | |
| 82 | K | H | -2.4023 | |
| 83 | S | H | -1.1963 | |
| 84 | S | H | -1.0310 | |
| 85 | S | H | -1.2146 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2602 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -0.9972 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.3257 | |
| 93 | S | H | -1.1258 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.1600 | |
| 96 | S | H | -1.2830 | |
| 97 | E | H | -1.7280 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.5346 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2470 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | T | H | 0.1846 | |
| 108 | G | H | -0.0848 | |
| 109 | E | H | -0.1144 | |
| 110 | W | H | 0.9243 | |
| 111 | T | H | 0.3086 | |
| 112 | V | H | 0.0000 | |
| 113 | G | H | 0.0000 | |
| 114 | Y | H | 0.1100 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.5219 | |
| 117 | V | H | -0.2545 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | T | H | -0.5149 | |
| 121 | G | H | -0.2413 | |
| 122 | T | H | 0.0000 | |
| 123 | M | H | 0.2788 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0169 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6221 | |
| 128 | S | H | -0.7555 | |
| 1 | Q | L | -0.7033 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 1.2377 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | 0.0675 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.1333 | |
| 8 | P | L | 0.2299 | |
| 9 | A | L | 0.5492 | |
| 10 | I | L | 1.3685 | |
| 11 | M | L | 0.3453 | |
| 12 | S | L | -0.7377 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.6438 | |
| 15 | P | L | -1.7615 | |
| 16 | G | L | -1.8148 | |
| 17 | E | L | -2.4124 | |
| 18 | K | L | -2.4975 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6407 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3547 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.2004 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | 0.0354 | |
| 27 | S | L | -0.2587 | |
| 28 | S | L | -0.5793 | |
| 29 | V | L | 0.0000 | |
| 37 | S | L | -0.3516 | |
| 38 | Y | L | 0.0609 | |
| 39 | M | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9428 | |
| 45 | K | L | -1.3592 | |
| 46 | P | L | -0.8176 | |
| 47 | G | L | -0.8036 | |
| 48 | S | L | -0.7599 | |
| 49 | S | L | 0.0000 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1543 | |
| 52 | P | L | -0.5074 | |
| 53 | W | L | -0.3143 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1920 | |
| 56 | R | L | -0.4622 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.6924 | |
| 66 | N | L | -0.9888 | |
| 67 | L | L | -0.2537 | |
| 68 | A | L | -0.4290 | |
| 69 | S | L | -0.4876 | |
| 70 | G | L | -0.5081 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.2437 | |
| 74 | T | L | -0.2545 | |
| 75 | R | L | -0.7443 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4491 | |
| 78 | G | L | -0.4974 | |
| 79 | S | L | -0.6229 | |
| 80 | G | L | -0.6257 | |
| 83 | S | L | -0.5440 | |
| 84 | G | L | -0.5403 | |
| 85 | T | L | -0.5278 | |
| 86 | S | L | -0.6383 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.3932 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5958 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4022 | |
| 93 | S | L | -1.7312 | |
| 94 | M | L | 0.0000 | |
| 95 | E | L | -1.8740 | |
| 96 | A | L | -1.6004 | |
| 97 | E | L | -2.2177 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.4783 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6660 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.1504 | |
| 108 | H | L | -0.4081 | |
| 109 | S | L | -0.0915 | |
| 114 | Y | L | 0.5089 | |
| 115 | P | L | -0.3182 | |
| 116 | R | L | 0.0597 | |
| 117 | T | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7907 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.7379 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.3669 | |
| 126 | I | L | -1.0303 | |
| 127 | K | L | -1.6663 |