Project name: Pep5-Mut3-KLVFF

Status: done

Started: 2026-02-08 16:28:26
Settings
Chain sequence(s) A: RGDGWKPFVIVDLVLHALGTIIGGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-1.9267
Maximal score value
2.6321
Average score
0.7287
Total score value
21.8608

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9267
2 G A -1.0992
3 D A -1.8290
4 G A -0.5430
5 W A 0.9155
6 K A -0.9116
7 P A -0.0402
8 F A 2.1846
9 V A 2.2441
10 I A 2.6218
11 V A 1.7603
12 D A -1.1707
13 L A 1.4681
14 V A 1.8891
15 L A 1.6007
16 H A -0.6847
17 A A 0.0708
18 L A 1.1150
19 G A -0.2442
20 T A 0.2242
21 I A 2.3878
22 I A 2.3611
23 G A 0.1122
24 G A 0.0933
25 I A 1.4297
26 K A -1.0844
27 L A 1.5635
28 V A 2.4271
29 F A 2.6321
30 F A 2.2935
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Laboratory of Theory of Biopolymers 2018