Project name: M-1

Status: done

Started: 2026-07-13 12:24:43
Settings
Chain sequence(s) A: DVQLVESGGGLVQPGGSLKLSCAASGFILDYYAIGWFRQAPGKEREGVLCIDASDDIAYYADSVKGRFTISRDNSKNTVYLQMNSLRPEDTAVYYCATPIGLSSSCLLEYDYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-2.2515
Maximal score value
1.944
Average score
-0.2062
Total score value
-25.7755

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.7282
2 V A -0.2179
3 Q A -0.8771
4 L A 0.0000
5 V A 1.6395
6 E A 0.0000
7 S A -0.2365
8 G A -0.4232
9 G A -0.2913
10 G A 0.0561
11 L A 1.5096
12 V A 0.0000
13 Q A -1.2198
14 P A -0.4182
15 G A -0.5174
16 G A -0.1703
17 S A -0.1951
18 L A -0.0977
19 K A -1.6857
20 L A 0.0000
21 S A -0.0261
22 C A 0.0000
23 A A 0.0305
24 A A -0.0276
25 S A -0.2959
26 G A -0.4214
27 F A 0.4586
28 I A 1.7805
29 L A 0.0000
30 D A -0.5080
31 Y A 1.2484
32 Y A 0.6152
33 A A 0.0000
34 I A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -0.5756
40 A A -0.1244
41 P A -0.3370
42 G A -0.8144
43 K A -2.1208
44 E A -2.2515
45 R A -1.2472
46 E A -1.2945
47 G A -0.2253
48 V A 0.0000
49 L A 0.0000
50 C A 0.0000
51 I A 0.0000
52 D A -0.4737
53 A A -0.0671
54 S A -0.5341
55 D A -2.1462
56 D A -1.9184
57 I A 0.7376
58 A A 0.3326
59 Y A 0.7243
60 Y A 0.5015
61 A A -0.2414
62 D A -1.8258
63 S A -0.5336
64 V A 0.0000
65 K A -1.7843
66 G A -0.8336
67 R A -0.4200
68 F A 0.0000
69 T A -0.0467
70 I A 0.0000
71 S A -0.1897
72 R A -0.3419
73 D A -0.7403
74 N A -1.4170
75 S A -0.7461
76 K A -1.7702
77 N A -0.6345
78 T A 0.0000
79 V A 0.0000
80 Y A 0.2027
81 L A 0.0000
82 Q A -0.4457
83 M A 0.0000
84 N A -0.6682
85 S A -0.3075
86 L A 0.0000
87 R A -1.0445
88 P A -0.7404
89 E A -1.8619
90 D A 0.0000
91 T A -0.0165
92 A A 0.0000
93 V A 0.6553
94 Y A 0.0000
95 Y A 0.1730
96 C A 0.0000
97 A A 0.0000
98 T A 0.0000
99 P A 0.0000
100 I A 1.9440
101 G A 0.2677
102 L A 1.4691
103 S A 0.1911
104 S A -0.2342
105 S A -0.0874
106 C A 0.1376
107 L A 0.4897
108 L A 0.5399
109 E A -0.8489
110 Y A 1.0470
111 D A -0.0513
112 Y A 0.0000
113 D A -1.7071
114 Y A 0.1834
115 W A 0.3630
116 G A -0.2165
117 Q A -1.2162
118 G A -0.2388
119 T A 0.2654
120 L A 1.6085
121 V A 0.0000
122 T A 0.1504
123 V A 0.0000
124 S A -0.1643
125 S A -0.2356
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018