| Chain sequence(s) |
A: FGGHKFG
C: FGGHKFG B: FGGHKFG D: FGGHKFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:18)
[INFO] Main: Simulation completed successfully. (00:02:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.5791 | |
| 2 | G | A | 1.3825 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -0.2275 | |
| 5 | K | A | -0.9547 | |
| 6 | F | A | 0.3641 | |
| 7 | G | A | -0.1653 | |
| 1 | F | B | 1.9401 | |
| 2 | G | B | 0.6367 | |
| 3 | G | B | -0.2476 | |
| 4 | H | B | -0.6528 | |
| 5 | K | B | -0.8279 | |
| 6 | F | B | 0.7257 | |
| 7 | G | B | -0.0591 | |
| 1 | F | C | 1.6314 | |
| 2 | G | C | 0.8647 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.5112 | |
| 5 | K | C | -0.3030 | |
| 6 | F | C | 1.3983 | |
| 7 | G | C | 0.0416 | |
| 1 | F | D | 1.3533 | |
| 2 | G | D | 0.1046 | |
| 3 | G | D | -0.3492 | |
| 4 | H | D | -1.0133 | |
| 5 | K | D | -1.9484 | |
| 6 | F | D | 0.2291 | |
| 7 | G | D | -0.3107 |