| Chain sequence(s) |
A: FGKGHGF
C: FGKGHGF B: FGKGHGF D: FGKGHGF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:43)
[INFO] Main: Simulation completed successfully. (00:00:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.2746 | |
| 2 | G | A | 0.0000 | |
| 3 | K | A | -3.7414 | |
| 4 | G | A | -3.1918 | |
| 5 | H | A | -2.3942 | |
| 6 | G | A | 0.6027 | |
| 7 | F | A | 3.4506 | |
| 1 | F | B | 2.3337 | |
| 2 | G | B | 0.6330 | |
| 3 | K | B | -2.6622 | |
| 4 | G | B | -2.6844 | |
| 5 | H | B | -2.4516 | |
| 6 | G | B | -0.5149 | |
| 7 | F | B | 2.6250 | |
| 1 | F | C | 1.7263 | |
| 2 | G | C | -0.7006 | |
| 3 | K | C | -2.8959 | |
| 4 | G | C | -1.7362 | |
| 5 | H | C | -1.1226 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 3.5779 | |
| 1 | F | D | 2.2781 | |
| 2 | G | D | -0.9687 | |
| 3 | K | D | -2.8753 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -1.9585 | |
| 6 | G | D | 0.0337 | |
| 7 | F | D | 3.6039 |