Project name: query_structure

Status: done

Started: 2026-03-16 19:55:55
Settings
Chain sequence(s) A: APGQCNHGRCPSGICCSQYGYCGTGPAYCGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-2.626
Maximal score value
0.9944
Average score
-0.3287
Total score value
-10.189

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.3813
2 P A -0.5039
3 G A -0.3672
4 Q A -1.0478
5 C A -1.5051
6 N A -2.5318
7 H A -2.4505
8 G A -2.0676
9 R A -2.6260
10 C A 0.0000
11 P A -0.7488
12 S A -0.5777
13 G A -0.1587
14 I A 0.5922
15 C A 0.4862
16 C A 0.0963
17 S A 0.0000
18 Q A -0.2519
19 Y A 0.9944
20 G A 0.0629
21 Y A 0.7119
22 C A 0.2899
23 G A 0.6563
24 T A 0.3696
25 G A 0.2005
26 P A -0.1389
27 A A 0.2177
28 Y A 0.9186
29 C A 0.5445
30 G A -0.4373
31 G A -0.5355
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Laboratory of Theory of Biopolymers 2018