Project name: amelogenin X

Status: done

Started: 2025-11-19 10:38:45
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Chain sequence(s) A: MGTWILFACLLGAAFAMPLPPHPGHPGYINFSYENSHSQAINVDRTALVLTPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQPMMPVPGQHSMTPIQHHQPNLPPPAQQPYQPQPVQPQPHQPMQPQPPVHPMQPLPPQPPLPPMFPMQPLPPMLPDLTLEAWPSTDKTKREEVD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:46)
Show buried residues

Minimal score value
-4.1483
Maximal score value
4.2057
Average score
0.0559
Total score value
11.4508

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.4607
2 G A 1.2145
3 T A 1.9475
4 W A 3.1601
5 I A 3.3200
6 L A 3.9821
7 F A 4.2057
8 A A 3.0229
9 C A 3.3505
10 L A 3.7220
11 L A 2.7716
12 G A 2.0218
13 A A 1.9252
14 A A 2.1129
15 F A 2.8384
16 A A 1.8297
17 M A 1.9267
18 P A 1.3987
19 L A 1.6644
20 P A 0.4884
21 P A -0.2561
22 H A -1.2535
23 P A -1.1048
24 G A -1.3514
25 H A -1.4903
26 P A -0.8407
27 G A -0.5211
28 Y A 0.3537
29 I A 0.8719
30 N A 0.4526
31 F A 0.6667
32 S A -0.0734
33 Y A -0.0516
34 E A -2.0316
35 N A -2.2802
36 S A -1.7948
37 H A -1.9279
38 S A -1.5721
39 Q A -1.3350
40 A A -0.1455
41 I A 0.7249
42 N A -0.4417
43 V A 0.3522
44 D A -1.1168
45 R A -1.3453
46 T A 0.0161
47 A A 0.7358
48 L A 1.8338
49 V A 2.4587
50 L A 2.0958
51 T A 1.5355
52 P A 1.2987
53 L A 1.6543
54 K A -0.1449
55 W A 0.7404
56 Y A 0.9393
57 Q A -0.6761
58 S A 0.0544
59 I A 1.1573
60 R A -0.2375
61 P A -0.2595
62 P A -0.0517
63 Y A 0.9354
64 P A 0.5057
65 S A 0.5552
66 Y A 1.2526
67 G A 0.1862
68 Y A 0.6272
69 E A -1.0040
70 P A -0.3250
71 M A 0.7698
72 G A 0.2797
73 G A 0.3129
74 W A 1.2857
75 L A 1.0774
76 H A -0.6072
77 H A -0.6250
78 Q A -0.1962
79 I A 2.1622
80 I A 3.0724
81 P A 2.1958
82 V A 3.1910
83 L A 2.1377
84 S A 0.0904
85 Q A -1.8333
86 Q A -2.2672
87 H A -2.0950
88 P A -1.1352
89 P A -0.8324
90 T A -0.6388
91 H A -0.7944
92 T A -0.0589
93 L A 0.5355
94 Q A -0.9469
95 P A -1.3782
96 H A -1.7966
97 H A -1.6304
98 H A -0.6647
99 I A 1.7296
100 P A 1.6795
101 V A 2.8906
102 V A 2.5215
103 P A 0.5837
104 A A -0.3318
105 Q A -1.3313
106 Q A -1.1976
107 P A 0.2803
108 V A 1.8679
109 I A 2.0414
110 P A 0.1762
111 Q A -1.0064
112 Q A -1.2720
113 P A -0.3706
114 M A 1.1122
115 M A 1.6256
116 P A 1.2282
117 V A 1.6819
118 P A 0.0631
119 G A -1.0952
120 Q A -1.8329
121 H A -1.5675
122 S A -0.5165
123 M A 0.6213
124 T A 0.5827
125 P A 0.6431
126 I A 0.9931
127 Q A -0.8153
128 H A -1.9236
129 H A -2.3698
130 Q A -2.3401
131 P A -1.5579
132 N A -0.9804
133 L A 0.7158
134 P A 0.0284
135 P A -0.1737
136 P A -0.7665
137 A A -0.9502
138 Q A -1.8910
139 Q A -1.8062
140 P A -0.7295
141 Y A 0.1654
142 Q A -1.1701
143 P A -0.9076
144 Q A -1.3532
145 P A -0.4971
146 V A 0.5394
147 Q A -1.0460
148 P A -1.1924
149 Q A -1.9690
150 P A -1.8786
151 H A -1.9619
152 Q A -1.9814
153 P A -0.9723
154 M A -0.3451
155 Q A -1.4150
156 P A -1.2844
157 Q A -1.4074
158 P A -0.8901
159 P A -0.1642
160 V A 1.0221
161 H A -0.2674
162 P A -0.1798
163 M A 0.5092
164 Q A -0.6683
165 P A 0.0604
166 L A 0.8913
167 P A -0.2120
168 P A -0.6981
169 Q A -1.1021
170 P A -0.6957
171 P A -0.0627
172 L A 1.1616
173 P A 0.8374
174 P A 1.0068
175 M A 2.1862
176 F A 2.3180
177 P A 1.0589
178 M A 1.2342
179 Q A -0.2001
180 P A 0.0594
181 L A 1.2422
182 P A 0.7947
183 P A 0.8994
184 M A 1.5249
185 L A 1.6390
186 P A 0.3155
187 D A -0.3693
188 L A 0.9541
189 T A 0.3491
190 L A 0.9446
191 E A -0.5194
192 A A 0.1078
193 W A 0.7543
194 P A -0.3313
195 S A -0.8171
196 T A -1.4468
197 D A -3.0214
198 K A -3.2220
199 T A -2.8322
200 K A -3.8683
201 R A -4.1483
202 E A -3.7448
203 E A -2.8791
204 V A -0.6210
205 D A -1.3680
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Laboratory of Theory of Biopolymers 2018