Project name: f7552176df82e8c

Status: done

Started: 2025-02-07 23:22:10
Settings
Chain sequence(s) A: MSKIKGNVKVGGGGSGGSTVANIAPVFTGDCKTIPTPEECATFLYKVVNSGGWEKCWVEEVIPWDLGVPTPLVLHLVKNNALPNGKGLVPGCGGGYDVVAMANPERFMVGLDISENALKKARETFSTMPNSSCFSFVKEDVFTWRPEQPFDFIFDYVFFCAIDPKMRPAWGKAYELLKPDGELITLMYPITNHEGGPPFSVSESEYEKVLVPLGFKQLSLEDYSDLAVEPRKGKEKLARWKKMNN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:35)
Show buried residues

Minimal score value
-2.8799
Maximal score value
1.3282
Average score
-0.7109
Total score value
-174.1637

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4987
2 S A -1.0808
3 K A -2.1086
4 I A 0.0000
5 K A -2.3792
6 G A -1.3896
7 N A -0.9800
8 V A 0.5048
9 K A -0.5770
10 V A 0.7289
11 G A -0.3886
12 G A -0.7542
13 G A -0.8698
14 G A -1.0926
15 S A -0.9116
16 G A -0.9530
17 G A -0.6987
18 S A -0.1023
19 T A 0.2793
20 V A 1.3282
21 A A 0.5918
22 N A -0.4185
23 I A 0.1951
24 A A -0.1275
25 P A 0.0695
26 V A 0.2263
27 F A -0.1205
28 T A -1.1036
29 G A -1.6998
30 D A -2.0096
31 C A -0.9882
32 K A -1.1461
33 T A -0.8476
34 I A 0.0000
35 P A -0.8965
36 T A -1.1948
37 P A 0.0000
38 E A -1.8479
39 E A -1.7906
40 C A 0.0000
41 A A 0.0000
42 T A -0.8372
43 F A -0.0117
44 L A 0.0000
45 Y A -0.2260
46 K A -1.4462
47 V A -0.9990
48 V A -0.7446
49 N A -1.6703
50 S A -1.2430
51 G A -1.0167
52 G A -0.7353
53 W A -0.0287
54 E A -0.9143
55 K A -1.0384
56 C A 0.0000
57 W A 0.0000
58 V A -0.1662
59 E A -1.8588
60 E A -2.0598
61 V A -0.5562
62 I A -0.3052
63 P A -0.2916
64 W A 0.1314
65 D A -0.2465
66 L A 0.0000
67 G A -0.3885
68 V A -0.2979
69 P A 0.0000
70 T A 0.0000
71 P A 0.1339
72 L A 0.0000
73 V A 0.0000
74 L A 0.0190
75 H A -0.7304
76 L A 0.0000
77 V A -1.0068
78 K A -2.1973
79 N A -2.1152
80 N A -2.1759
81 A A -1.2694
82 L A 0.0000
83 P A -1.2638
84 N A -2.2103
85 G A -1.5506
86 K A -1.3087
87 G A 0.0000
88 L A 0.0000
89 V A 0.0000
90 P A 0.0000
91 G A -0.1292
92 C A 0.2407
93 G A 0.0000
94 G A -0.6914
95 G A 0.0000
96 Y A 0.1313
97 D A -0.0014
98 V A 0.0000
99 V A 0.0000
100 A A 0.0000
101 M A 0.0000
102 A A 0.0000
103 N A -1.0488
104 P A -1.1183
105 E A -2.3704
106 R A 0.0000
107 F A -0.3674
108 M A 0.0000
109 V A 0.0000
110 G A 0.0000
111 L A 0.0000
112 D A 0.0000
113 I A -0.0753
114 S A 0.0000
115 E A -2.1672
116 N A -1.4745
117 A A 0.0000
118 L A 0.0000
119 K A -2.8688
120 K A -2.3445
121 A A 0.0000
122 R A -2.5796
123 E A -2.8799
124 T A -2.0685
125 F A 0.0000
126 S A -1.1847
127 T A -0.9073
128 M A 0.0000
129 P A -0.0896
130 N A 0.0000
131 S A -0.3205
132 S A -0.2450
133 C A -0.2631
134 F A 0.0000
135 S A -0.0766
136 F A 0.0000
137 V A -0.6333
138 K A -1.8250
139 E A -1.7324
140 D A -1.2700
141 V A 0.0000
142 F A -0.5345
143 T A -0.6521
144 W A -1.3871
145 R A -2.4641
146 P A -2.0181
147 E A -2.7798
148 Q A -2.5894
149 P A -2.0718
150 F A 0.0000
151 D A -1.5813
152 F A 0.0000
153 I A 0.0000
154 F A 0.0000
155 D A 0.0000
156 Y A 0.0000
157 V A 0.3979
158 F A 0.2992
159 F A 0.0000
160 C A 0.0000
161 A A 0.1584
162 I A 0.0000
163 D A -1.1478
164 P A -1.1683
165 K A -1.8372
166 M A -0.7127
167 R A 0.0000
168 P A -1.0800
169 A A -0.7395
170 W A 0.0000
171 G A 0.0000
172 K A -2.1060
173 A A 0.0000
174 Y A 0.0000
175 E A -2.6279
176 L A 0.0000
177 L A 0.0000
178 K A -2.2073
179 P A -2.1519
180 D A -2.6124
181 G A 0.0000
182 E A -1.0845
183 L A 0.0000
184 I A 0.0000
185 T A 0.0000
186 L A 0.0000
187 M A 0.0000
188 Y A 0.0000
189 P A 0.0000
190 I A -0.3896
191 T A -0.9441
192 N A -1.8254
193 H A -1.9928
194 E A -2.4078
195 G A -1.3214
196 G A -0.7631
197 P A 0.0000
198 P A 0.0000
199 F A -0.5129
200 S A -0.8108
201 V A 0.0000
202 S A -0.7163
203 E A -1.0291
204 S A -1.2107
205 E A -1.5708
206 Y A 0.0000
207 E A -1.8204
208 K A -1.9812
209 V A -1.0037
210 L A 0.0000
211 V A 0.1503
212 P A -0.1007
213 L A -0.3672
214 G A -0.4368
215 F A 0.0000
216 K A -1.3001
217 Q A -0.4107
218 L A 0.5695
219 S A 0.4296
220 L A 0.1524
221 E A -1.1938
222 D A -2.3997
223 Y A -1.5201
224 S A -2.1741
225 D A -2.3323
226 L A -1.0303
227 A A 0.0000
228 V A 0.0000
229 E A -2.5118
230 P A -1.6092
231 R A 0.0000
232 K A -2.5887
233 G A -1.9309
234 K A -1.3747
235 E A 0.0000
236 K A -1.2454
237 L A 0.0000
238 A A 0.0000
239 R A -0.2410
240 W A 0.0000
241 K A -1.5609
242 K A -1.9148
243 M A -1.2243
244 N A -2.1518
245 N A -1.8064
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018