| Chain sequence(s) |
H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYGMHWVRQAPGKGLEWVSAISGSGGTTFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.3310 | |
| 1 | V | H | -0.7437 | |
| 2 | Q | H | -0.8852 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 1.3520 | |
| 5 | E | H | 0.0000 | |
| 6 | S | H | -0.1149 | |
| 7 | G | H | -0.7652 | |
| 8 | G | H | 0.1465 | |
| 9 | G | H | 0.9292 | |
| 10 | V | H | 1.5552 | |
| 11 | V | H | 0.0000 | |
| 12 | Q | H | -1.7797 | |
| 13 | P | H | -2.0874 | |
| 14 | G | H | -2.0512 | |
| 15 | E | H | -2.2059 | |
| 16 | S | H | -1.6054 | |
| 17 | L | H | -1.0035 | |
| 18 | K | H | -1.9377 | |
| 19 | I | H | 0.0000 | |
| 20 | S | H | -0.3116 | |
| 21 | C | H | 0.0000 | |
| 22 | A | H | 0.0218 | |
| 23 | A | H | -0.3912 | |
| 24 | S | H | -0.5808 | |
| 25 | G | H | -0.8819 | |
| 26 | F | H | -0.3097 | |
| 27 | T | H | -0.1818 | |
| 28 | F | H | 0.0000 | |
| 29 | S | H | -0.8416 | |
| 30 | S | H | -0.1076 | |
| 31 | Y | H | 0.2249 | |
| 32 | G | H | 0.0324 | |
| 33 | M | H | 0.0000 | |
| 34 | H | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | 0.0000 | |
| 38 | Q | H | -0.7230 | |
| 39 | A | H | -1.0395 | |
| 40 | P | H | -0.9821 | |
| 41 | G | H | -1.5058 | |
| 42 | K | H | -2.3903 | |
| 43 | G | H | -1.6334 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.2556 | |
| 46 | W | H | 0.0000 | |
| 47 | V | H | 0.0000 | |
| 48 | S | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | S | H | -0.2688 | |
| 52 | G | H | -0.5074 | |
| 53 | S | H | -0.7145 | |
| 54 | G | H | -0.8100 | |
| 55 | G | H | -0.7091 | |
| 56 | T | H | -0.1627 | |
| 57 | T | H | 0.4215 | |
| 58 | F | H | 0.9133 | |
| 59 | Y | H | -0.2051 | |
| 60 | A | H | -1.1165 | |
| 61 | D | H | -2.3047 | |
| 62 | S | H | -1.7165 | |
| 63 | V | H | 0.0000 | |
| 64 | K | H | -2.3855 | |
| 65 | G | H | -1.7008 | |
| 66 | R | H | -1.2589 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.6427 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.4576 | |
| 71 | R | H | -1.0928 | |
| 72 | D | H | -1.6519 | |
| 73 | N | H | -1.8089 | |
| 74 | S | H | -1.6345 | |
| 75 | K | H | -2.4388 | |
| 76 | N | H | -1.8626 | |
| 77 | T | H | -1.0000 | |
| 78 | L | H | 0.0000 | |
| 79 | Y | H | -0.4585 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1285 | |
| 82 | M | H | 0.0000 | |
| 83 | N | H | -1.7217 | |
| 84 | S | H | -1.6493 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -2.7626 | |
| 87 | A | H | -1.9110 | |
| 88 | E | H | -2.3297 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.4277 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.8932 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | -0.3095 | |
| 98 | S | H | 0.0000 | |
| 99 | T | H | 0.8284 | |
| 100 | Y | H | 2.0477 | |
| 101 | Y | H | 1.7650 | |
| 102 | Y | H | 1.5766 | |
| 103 | G | H | 0.2750 | |
| 104 | A | H | -0.0289 | |
| 105 | S | H | 0.0226 | |
| 106 | G | H | 0.3150 | |
| 107 | Y | H | 1.6286 | |
| 108 | D | H | 1.2692 | |
| 109 | Y | H | 1.5940 | |
| 110 | Y | H | 0.6068 | |
| 111 | F | H | 0.0000 | |
| 112 | E | H | -0.8118 | |
| 113 | P | H | -0.8252 | |
| 114 | W | H | 0.0000 | |
| 115 | G | H | 0.0000 | |
| 116 | P | H | -0.3978 | |
| 117 | G | H | 0.1745 | |
| 118 | T | H | 0.7525 | |
| 119 | L | H | 1.7373 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3746 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.6568 | |
| 124 | S | H | -0.5924 | |
| 125 | D | L | -2.0058 | |
| 126 | I | L | 0.0000 | |
| 127 | Q | L | -2.1912 | |
| 128 | M | L | 0.0000 | |
| 129 | T | L | -1.2841 | |
| 130 | Q | L | 0.0000 | |
| 131 | S | L | -0.7328 | |
| 132 | P | L | -0.5979 | |
| 133 | S | L | -0.9651 | |
| 134 | S | L | -1.1332 | |
| 135 | L | L | -0.6520 | |
| 136 | S | L | -0.7043 | |
| 137 | A | L | 0.0000 | |
| 138 | S | L | -0.1486 | |
| 139 | V | L | 0.7172 | |
| 140 | G | L | -0.7084 | |
| 141 | D | L | -1.6688 | |
| 142 | R | L | -2.3426 | |
| 143 | V | L | 0.0000 | |
| 144 | T | L | -0.6345 | |
| 145 | I | L | 0.0000 | |
| 146 | T | L | -0.9693 | |
| 147 | C | L | 0.0000 | |
| 148 | R | L | -3.0413 | |
| 149 | A | L | 0.0000 | |
| 150 | S | L | -2.2542 | |
| 151 | Q | L | -2.8557 | |
| 152 | H | L | -2.5731 | |
| 153 | I | L | 0.0000 | |
| 154 | R | L | -2.6053 | |
| 155 | S | L | -1.5045 | |
| 156 | S | L | -0.4147 | |
| 157 | L | L | 0.0000 | |
| 158 | A | L | 0.0000 | |
| 159 | W | L | 0.0000 | |
| 160 | Y | L | 0.0000 | |
| 161 | Q | L | -1.0266 | |
| 162 | Q | L | -1.6565 | |
| 163 | K | L | -2.2092 | |
| 164 | P | L | -1.4918 | |
| 165 | G | L | -1.6706 | |
| 166 | K | L | -2.5638 | |
| 167 | A | L | -1.5654 | |
| 168 | P | L | 0.0000 | |
| 169 | K | L | -2.0067 | |
| 170 | L | L | 0.0000 | |
| 171 | L | L | 0.0000 | |
| 172 | I | L | 0.0000 | |
| 173 | Y | L | -0.2526 | |
| 174 | G | L | -0.8978 | |
| 175 | A | L | 0.0000 | |
| 176 | S | L | -0.8094 | |
| 177 | S | L | -0.8492 | |
| 178 | R | L | -1.6883 | |
| 179 | A | L | -0.9734 | |
| 180 | T | L | -0.6028 | |
| 181 | G | L | -0.9187 | |
| 182 | I | L | 0.0000 | |
| 183 | P | L | -1.3872 | |
| 184 | D | L | -2.3074 | |
| 185 | R | L | -1.6191 | |
| 186 | F | L | 0.0000 | |
| 187 | S | L | -1.0264 | |
| 188 | G | L | -0.6035 | |
| 189 | S | L | -0.8346 | |
| 190 | G | L | -1.4409 | |
| 191 | S | L | -1.8376 | |
| 192 | G | L | -2.4349 | |
| 193 | T | L | -2.6652 | |
| 194 | D | L | -3.1595 | |
| 195 | F | L | 0.0000 | |
| 196 | T | L | -0.9084 | |
| 197 | L | L | 0.0000 | |
| 198 | T | L | -0.6133 | |
| 199 | I | L | 0.0000 | |
| 200 | S | L | -1.6826 | |
| 201 | S | L | -1.2898 | |
| 202 | L | L | 0.0000 | |
| 203 | Q | L | -0.7796 | |
| 204 | P | L | -0.6497 | |
| 205 | E | L | -1.8874 | |
| 206 | D | L | 0.0000 | |
| 207 | F | L | -0.5804 | |
| 208 | A | L | 0.0000 | |
| 209 | T | L | -1.2871 | |
| 210 | Y | L | 0.0000 | |
| 211 | Y | L | 0.0000 | |
| 212 | C | L | 0.0000 | |
| 213 | Q | L | 0.0000 | |
| 214 | H | L | 0.0000 | |
| 215 | T | L | 1.2617 | |
| 216 | Y | L | 1.5474 | |
| 217 | I | L | 2.0944 | |
| 218 | T | L | 0.8403 | |
| 219 | P | L | 0.0262 | |
| 220 | Y | L | 0.0000 | |
| 221 | T | L | -0.4686 | |
| 222 | F | L | -0.4887 | |
| 223 | G | L | 0.0000 | |
| 224 | Q | L | -1.6086 | |
| 225 | G | L | 0.0000 | |
| 226 | T | L | 0.0000 | |
| 227 | K | L | -2.1581 | |
| 228 | V | L | 0.0000 | |
| 229 | E | L | -0.9103 | |
| 230 | I | L | 0.9383 | |
| 231 | K | L | -0.7858 |