Project name: f772705b94e2350

Status: done

Started: 2025-06-03 05:26:36
Settings
Chain sequence(s) H: QVQLQESGGGLVKPGGSLKLSCAASGFAFSIYDMSWVRQTPEKRLEWVAYISSGGGTTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARHSGYGSSYGVLFAYWGQGTLVTVSS
L: DIQLTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSILHSGVPSRFSGSGSGTDYSLTISNLEQEDFATYFCQQGNTLPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:45)
Show buried residues

Minimal score value
-2.8351
Maximal score value
1.895
Average score
-0.5177
Total score value
-119.0749

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4079
2 V H -0.7599
3 Q H -1.2869
4 L H 0.0000
5 Q H -1.2392
6 E H 0.0000
7 S H -0.6033
8 G H -0.5608
9 G H 0.1962
11 G H 0.7986
12 L H 1.3005
13 V H -0.2976
14 K H -1.8290
15 P H -1.7887
16 G H -1.4948
17 G H -1.2080
18 S H -1.0309
19 L H -0.7928
20 K H -1.6122
21 L H 0.0000
22 S H -0.6866
23 C H 0.0000
24 A H -0.8402
25 A H 0.0000
26 S H -1.1173
27 G H -0.9987
28 F H -0.0983
29 A H 0.4734
30 F H 0.0000
35 S H 0.1840
36 I H 1.8950
37 Y H 0.0000
38 D H -0.0144
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 T H -1.4655
46 P H -1.7887
47 E H -2.7342
48 K H -2.4945
49 R H -1.9576
50 L H 0.0000
51 E H -0.6747
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 Y H 0.3884
56 I H 0.0000
57 S H -0.1544
58 S H 0.0385
59 G H -0.5402
62 G H -0.8662
63 G H -0.7249
64 T H -0.2221
65 T H 0.3237
66 Y H 0.6940
67 Y H -0.3554
68 P H 0.0000
69 D H -2.4047
70 T H -1.6957
71 V H 0.0000
72 K H -2.4833
74 G H -1.7313
75 R H -1.6548
76 F H 0.0000
77 T H -0.8525
78 I H 0.0000
79 S H -0.5141
80 R H -0.9640
81 D H -1.3984
82 N H -1.2276
83 A H -1.2734
84 K H -2.2226
85 N H -1.6759
86 T H -1.1621
87 L H 0.0000
88 Y H -0.4982
89 L H 0.0000
90 Q H -1.5750
91 M H 0.0000
92 S H -1.1002
93 S H -1.1704
94 L H 0.0000
95 K H -2.5048
96 S H -2.0618
97 E H -2.4328
98 D H 0.0000
99 T H -0.4952
100 A H 0.0000
101 M H 0.5123
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 H H 0.0000
108 S H 0.0000
109 G H 0.5677
110 Y H 1.2567
111 G H 0.0895
111A S H -0.0184
112B S H 0.4767
112A Y H 0.7035
112 G H 0.2483
113 V H 0.0000
114 L H 0.0000
115 F H 0.0000
116 A H 0.0000
117 Y H 0.0836
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2939
121 G H -0.2915
122 T H 0.2249
123 L H 1.4766
124 V H 0.0000
125 T H 0.1504
126 V H 0.0000
127 S H -0.9841
128 S H -0.7754
1 D L -2.1017
2 I L 0.0000
3 Q L -2.1468
4 L L 0.0000
5 T L -1.2689
6 Q L 0.0000
7 T L -0.5904
8 T L -0.4051
9 S L -0.6668
10 S L -0.8738
11 L L -0.4441
12 S L -0.6960
13 A L 0.0000
14 S L -0.7224
15 L L -0.5169
16 G L -1.4425
17 D L -2.0218
18 R L -2.5066
19 V L 0.0000
20 T L -0.5409
21 I L 0.0000
22 S L -0.7944
23 C L 0.0000
24 R L -2.8351
25 A L 0.0000
26 S L -2.1397
27 Q L -2.5507
28 D L -2.4226
29 I L 0.0000
36 S L -0.7447
37 N L -0.3910
38 Y L 0.4128
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5125
46 P L -1.3952
47 D L -2.1440
48 G L -1.3731
49 T L -1.1368
50 V L 0.0000
51 K L -0.9131
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 1.1870
56 Y L 1.2287
57 T L 0.0000
65 S L 0.7198
66 I L 1.5890
67 L L 0.9959
68 H L 0.1715
69 S L -0.1810
70 G L -0.4580
71 V L -0.2065
72 P L -0.2521
74 S L -0.3240
75 R L -1.0333
76 F L 0.0000
77 S L -0.0405
78 G L 0.1297
79 S L -0.3628
80 G L -0.9789
83 S L -1.1566
84 G L -1.5821
85 T L -2.0950
86 D L -2.1807
87 Y L 0.0000
88 S L -0.7199
89 L L 0.0000
90 T L -0.7297
91 I L 0.0000
92 S L -1.7711
93 N L -2.3716
94 L L 0.0000
95 E L -2.5232
96 Q L -2.1834
97 E L -2.6961
98 D L 0.0000
99 F L 0.0000
100 A L 0.0000
101 T L -1.0385
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 N L -0.1684
109 T L -0.1620
114 L L 0.2937
115 P L -0.3191
116 W L 0.0000
117 T L -0.6645
118 F L 0.0000
119 G L 0.0000
120 G L -1.4217
121 G L 0.0000
122 T L 0.0000
123 K L -1.6980
124 L L 0.0000
125 E L -0.8885
126 I L 0.6447
127 K L -0.9174
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Laboratory of Theory of Biopolymers 2018