Project name: query_structure

Status: done

Started: 2026-03-16 23:44:29
Settings
Chain sequence(s) A: NGLPVCGETCVGGTCNTPGCTCSWPVCTR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-1.9817
Maximal score value
1.7146
Average score
-0.1805
Total score value
-5.2335

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.8952
2 G A -0.8085
3 L A 0.5627
4 P A 0.4945
5 V A 0.7895
6 C A -0.2768
7 G A -0.5750
8 E A -0.8023
9 T A 0.2104
10 C A 0.0000
11 V A 1.7146
12 G A 0.1872
13 G A 0.0154
14 T A -0.3089
15 C A -0.4624
16 N A -1.6182
17 T A -1.2843
18 P A -1.0542
19 G A -1.2671
20 C A -1.1706
21 T A -0.7505
22 C A 0.0146
23 S A 0.5869
24 W A 1.6929
25 P A 1.2531
26 V A 1.5004
27 C A 0.0000
28 T A 0.0000
29 R A -1.9817
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Laboratory of Theory of Biopolymers 2018