Project name: query_structure

Status: done

Started: 2026-03-17 00:58:02
Settings
Chain sequence(s) A: QVYKGGYARPIPRPPPFVRPLPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKGYSG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:49)
Show buried residues

Minimal score value
-2.0375
Maximal score value
2.1528
Average score
-0.2724
Total score value
-17.1591

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -0.2570
2 V A 1.3414
3 Y A 0.9345
4 K A -0.6988
5 G A -0.5492
6 G A -0.3298
7 Y A 0.3974
8 A A -0.2916
9 R A -1.3514
10 P A -0.2867
11 I A 0.8403
12 P A -0.6495
13 R A -1.8338
14 P A -0.8995
15 P A -0.2515
16 P A 0.7104
17 F A 2.1528
18 V A 1.8229
19 R A -0.3580
20 P A 0.2187
21 L A 0.9073
22 P A -0.1407
23 G A -0.2165
24 G A -0.3235
25 P A 0.1963
26 I A 1.4390
27 G A 0.2935
28 P A 0.2577
29 Y A 0.6792
30 N A -0.8402
31 G A -0.9062
32 C A -0.2258
33 P A 0.1123
34 V A 1.2684
35 S A 0.0459
36 C A -0.5296
37 R A -1.4347
38 G A -1.1733
39 I A -0.6047
40 S A -0.0800
41 F A 0.8664
42 S A -0.3652
43 Q A -1.0619
44 A A 0.0000
45 R A -2.0375
46 S A -1.5424
47 C A 0.0000
48 C A -1.2984
49 S A -1.3320
50 R A -1.9479
51 L A -0.2036
52 G A -0.9432
53 R A -0.6048
54 C A 0.0000
55 C A -0.3173
56 H A -1.2941
57 V A -0.7006
58 G A -0.8805
59 K A -1.9559
60 G A -0.7983
61 Y A 0.4338
62 S A -0.2661
63 G A -0.2956
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018