Project name: ecd_575_1st

Status: done

Started: 2024-06-13 13:43:28
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLALSVILVFMLFFIMLSLGCTMEFSKIKAHLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKGDMNLSIVMTTCSTFCALGMMPLLLYIYSRGIYDGDLKDKVPYKGIVISLVLVLIPCTIGIVLKSKRPQYMRYVIKGGMIIILLCSVAVTVLSAINVGKSIMFAMTPLLIATSSLMPFIGFLLGYVLSALFCLNGRCRRTVSMETGCQNVQLCSTILNVAFPPEVIGPLFFFPLLYMIFQLGEGLLLIAIFWCYEKFKT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:41)
Show buried residues

Minimal score value
-3.1195
Maximal score value
4.0248
Average score
0.299
Total score value
90.2974

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
11 N A -1.0319
12 F A -0.1612
13 T A -0.2074
14 L A 0.0445
15 P A -0.3870
16 P A -0.8454
17 N A -1.6414
18 F A -1.0500
19 G A -1.4086
20 K A -2.1781
21 R A -1.3665
22 P A -0.3723
23 T A 0.3198
24 D A 0.2337
25 L A 1.2198
26 A A 1.3530
27 L A 1.7655
28 S A 2.0357
29 V A 2.7213
30 I A 3.0208
31 L A 3.3301
32 V A 4.0032
33 F A 4.0248
34 M A 3.4602
35 L A 2.9236
36 F A 3.2619
37 F A 2.3304
38 I A 1.7262
39 M A 0.0000
40 L A 1.4517
41 S A 0.0000
42 L A 0.0000
43 G A 0.0000
44 C A 0.0000
45 T A -0.2707
46 M A 0.0000
47 E A -0.9919
48 F A -0.2194
49 S A -0.9768
50 K A -1.7310
51 I A -0.7917
52 K A -0.8746
53 A A -0.6943
54 H A -0.7752
55 L A 0.2395
56 W A 0.1632
57 K A -1.5358
58 P A -1.1940
59 K A -1.7854
60 G A -0.8144
61 L A -0.1629
62 A A -0.1195
63 I A 0.0000
64 A A 0.0000
65 L A 1.2059
66 V A 1.9002
67 A A 0.0000
68 Q A 0.0000
69 Y A 0.7975
70 G A 0.5470
71 I A 0.8710
72 M A 0.0000
73 P A 0.0000
74 L A 1.2811
75 T A 0.9678
76 A A 0.0000
77 F A 1.0907
78 V A 1.2219
79 L A 0.0000
80 G A 0.0000
81 K A -1.2555
82 V A 0.2837
83 F A -0.3095
84 R A -2.1122
85 L A -1.7455
86 K A -2.6658
87 N A -2.0194
88 I A -0.4203
89 E A 0.0000
90 A A -0.9794
91 L A 0.0000
92 A A 0.0000
93 I A 0.0000
94 L A 0.0000
95 V A 0.0000
96 C A 0.0000
97 G A 0.0000
98 C A 0.0000
99 S A 0.0000
100 P A 0.0000
101 G A 0.0000
102 G A 0.0000
103 N A -0.0445
104 L A 0.4907
105 S A 0.0000
106 N A 0.0000
107 V A 0.3777
108 F A 0.0000
109 S A 0.0000
110 L A -0.1180
111 A A 0.1116
112 M A 0.0000
113 K A -2.0993
114 G A 0.0000
115 D A -1.5794
116 M A 0.0000
117 N A 0.0000
118 L A 0.0000
119 S A 0.0000
120 I A 0.0000
121 V A 0.0000
122 M A 0.0000
123 T A 0.0000
124 T A 0.8144
125 C A 1.1207
126 S A 0.0000
127 T A 1.0725
128 F A 2.2258
129 C A 1.2275
130 A A 0.0000
131 L A 0.7906
132 G A 0.6303
133 M A 0.9641
134 M A 0.0000
135 P A 0.0000
136 L A 1.6265
137 L A 0.0000
138 L A 0.0000
139 Y A 0.9645
140 I A 1.3174
141 Y A 0.7614
142 S A -0.6241
143 R A -1.7535
144 G A -1.5663
145 I A -1.3179
146 Y A -1.3490
147 D A -2.4159
148 G A -2.0306
149 D A -2.8757
150 L A 0.0000
151 K A -2.5061
152 D A -2.8050
153 K A -1.7502
154 V A 0.0000
155 P A -0.8428
156 Y A -0.2279
157 K A -1.1300
158 G A -0.3186
159 I A 0.0000
160 V A 1.4077
161 I A 1.8504
162 S A 1.4603
163 L A 0.0000
164 V A 3.1614
165 L A 3.2987
166 V A 0.0000
167 L A 2.5424
168 I A 3.0033
169 P A 0.0000
170 C A 0.0000
171 T A 1.4913
172 I A 2.1984
173 G A 0.0000
174 I A 0.0000
175 V A 0.1658
176 L A -0.3555
177 K A -1.3662
178 S A -1.4744
179 K A -2.7021
180 R A -2.9216
181 P A -2.0826
182 Q A -1.6839
183 Y A -0.1458
184 M A -0.6835
185 R A -1.3802
186 Y A 0.3354
187 V A 0.3039
188 I A 0.0359
189 K A -1.1035
190 G A 0.1586
191 G A 0.0000
192 M A 1.3223
193 I A 2.0159
194 I A 2.4275
195 I A 2.8907
196 L A 3.4917
197 L A 3.5376
198 C A 3.4136
199 S A 2.5828
200 V A 3.0909
201 A A 2.3147
202 V A 2.2369
203 T A 1.6241
204 V A 2.3970
205 L A 1.9021
206 S A 1.4138
207 A A 1.3697
208 I A 2.2122
209 N A 0.0000
210 V A 0.6286
211 G A 0.0190
212 K A -0.9542
213 S A 0.0000
214 I A 0.7270
215 M A 1.0968
216 F A 0.8542
217 A A 0.0000
218 M A 1.0092
219 T A 0.6362
220 P A 0.3150
221 L A 0.6077
222 L A 0.0000
223 I A 0.9109
224 A A 0.6684
225 T A 0.0000
226 S A 0.0000
227 S A 0.9533
228 L A 1.2168
229 M A 0.0000
230 P A 0.0000
231 F A 1.7909
232 I A 1.5734
233 G A 0.0000
234 F A 0.0000
235 L A 1.9377
236 L A 1.7867
237 G A 0.0000
238 Y A 1.6537
239 V A 1.9540
240 L A 2.1505
241 S A 0.0000
242 A A 1.5551
243 L A 2.7536
244 F A 2.3601
245 C A 1.6624
246 L A 0.0541
247 N A -1.5875
248 G A -1.8578
249 R A -3.1195
250 C A -1.9599
251 R A -1.1903
252 R A -1.7401
253 T A 0.0000
254 V A 0.0000
255 S A 0.0000
256 M A 0.0000
257 E A 0.0000
258 T A 0.0000
259 G A 0.0000
260 C A 0.0000
261 Q A 0.0000
262 N A -0.4533
263 V A -0.3864
264 Q A -1.0753
265 L A -0.6826
266 C A 0.0000
267 S A -0.2741
268 T A -0.2481
269 I A 0.0000
270 L A 0.0000
271 N A 0.0917
272 V A 0.9985
273 A A -0.0745
274 F A 0.4571
275 P A -0.1786
276 P A -0.5754
277 E A -1.1044
278 V A 0.5004
279 I A 0.0000
280 G A 0.0000
281 P A 0.2484
282 L A 0.0000
283 F A 0.3910
284 F A 0.0000
285 F A 0.0000
286 P A 0.2915
287 L A 0.7675
288 L A 0.0000
289 Y A 0.0000
290 M A 1.0800
291 I A 1.5934
292 F A 1.6198
293 Q A 0.0000
294 L A 1.5190
295 G A 1.1438
296 E A 1.1853
297 G A 0.0000
298 L A 2.5342
299 L A 2.5503
300 L A 2.2880
301 I A 2.1692
302 A A 2.2822
303 I A 2.9293
304 F A 1.9872
305 W A 1.1798
306 C A 1.2770
307 Y A 1.4236
308 E A -0.6193
309 K A -0.9623
310 F A 0.5514
311 K A -1.3260
312 T A -0.8672
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Laboratory of Theory of Biopolymers 2018