Project name: csgb-abeta (cluster3)

Status: done

Started: 2026-03-24 09:52:28
Settings
Chain sequence(s) A: QGGSKLLAVVAQEGSSNRAK
B: LVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-2.8293
Maximal score value
4.46
Average score
0.9678
Total score value
44.5177

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5217
2 G A -1.4522
3 G A -1.6200
4 S A -0.4634
5 K A 0.3179
6 L A 2.1444
7 L A 1.4537
8 A A 1.8264
9 V A 2.1438
10 V A 3.0175
11 A A 3.0930
12 Q A 2.5272
13 E A 2.3013
14 G A 1.1278
15 S A 0.3878
16 S A -1.0521
17 N A -2.3014
18 R A -2.8293
19 A A -1.9323
20 K A -2.0490
17 L B 3.0619
18 V B 3.7791
19 F B 4.4600
20 F B 3.3297
21 A B 1.2485
22 E B -1.1713
23 D B -0.8139
24 V B 0.6763
25 G B -0.1418
26 S B -0.8085
27 N B -1.8185
28 K B -1.5962
29 G B -0.0806
30 A B 0.5178
31 I B 2.2915
32 I B 2.0408
33 G B 1.6646
34 L B 2.1907
35 M B 2.8018
36 V B 3.0596
37 G B 1.9802
38 G B 2.2714
39 V B 2.9667
40 V B 3.4309
41 I B 2.8524
42 A B 1.2052
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Laboratory of Theory of Biopolymers 2018