Project name: 5-B9

Status: done

Started: 2025-07-01 05:26:16
Settings
Chain sequence(s) H: EVQLQQPGTELVKPGASVKLSCKASGSTFTSYNMHWVKQTPGQGLEWIGAFYPGNGATSYNQRFKGKATLTADKSSSSAYMQLNSLTSEDSAVYYCARDAYYPWFAFWGQGTLVTVSS
L: DVLMTQSHKFMSTSGGDRVNITCKASQDVGDAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYTRYPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:03)
Show buried residues

Minimal score value
-3.0451
Maximal score value
1.6793
Average score
-0.6482
Total score value
-145.8338

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1203
2 V H -1.2470
3 Q H -1.8989
4 L H 0.0000
5 Q H -2.1008
6 Q H 0.0000
7 P H -0.8859
8 G H -0.8233
9 T H 0.0294
11 E H 0.0407
12 L H 0.9651
13 V H 0.0000
14 K H -1.7390
15 P H -1.4800
16 G H -1.1911
17 A H -0.9578
18 S H -0.9786
19 V H -0.6629
20 K H -1.1592
21 L H 0.0000
22 S H -0.6121
23 C H 0.0000
24 K H -1.5653
25 A H 0.0000
26 S H -1.3395
27 G H -1.3178
28 S H -0.7540
29 T H -0.3650
30 F H 0.0000
35 T H -0.7267
36 S H -0.0158
37 Y H 0.2558
38 N H -0.0540
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.4288
45 T H -0.9303
46 P H -0.8240
47 G H -1.2739
48 Q H -1.7027
49 G H -1.0983
50 L H 0.0000
51 E H -0.7580
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.0000
56 F H 0.0000
57 Y H -0.1352
58 P H 0.0000
59 G H -1.0463
62 N H -1.4977
63 G H -0.9971
64 A H -0.3992
65 T H -0.1598
66 S H -0.1402
67 Y H -0.8868
68 N H -1.6116
69 Q H -2.7710
70 R H -3.0451
71 F H 0.0000
72 K H -2.9000
74 G H -1.9156
75 K H -1.7199
76 A H 0.0000
77 T H -0.7087
78 L H 0.0000
79 T H -0.1816
80 A H -0.9128
81 D H -1.6377
82 K H -2.3421
83 S H -1.2840
84 S H -1.0630
85 S H -1.2716
86 S H 0.0000
87 A H 0.0000
88 Y H -0.2090
89 M H 0.0000
90 Q H -0.8346
91 L H 0.0000
92 N H -0.9060
93 S H -0.9490
94 L H 0.0000
95 T H -1.2954
96 S H -1.4013
97 E H -1.9398
98 D H 0.0000
99 S H -0.4322
100 A H 0.0000
101 V H 0.3510
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0195
107 D H 0.0000
108 A H 0.9223
109 Y H 1.6793
110 Y H 1.5678
113 P H 0.7011
114 W H 0.0000
115 F H 0.0000
116 A H 0.0847
117 F H 0.1592
118 W H -0.5182
119 G H 0.0000
120 Q H -1.8011
121 G H 0.0000
122 T H 0.0000
123 L H 0.5043
124 V H 0.0000
125 T H 0.0656
126 V H -0.5811
127 S H -0.5409
128 S H -0.6959
1 D L -1.5966
2 V L 0.0000
3 L L 0.6331
4 M L 0.0000
5 T L -0.5743
6 Q L -0.7959
7 S L -1.0171
8 H L -1.1637
9 K L -1.0095
10 F L 0.5473
11 M L 0.0371
12 S L -0.4553
13 T L 0.0000
14 S L -1.9260
15 G L -1.9369
16 G L -2.1652
17 D L -2.4921
18 R L -2.7996
19 V L 0.0000
20 N L -0.8614
21 I L 0.0000
22 T L -0.9782
23 C L 0.0000
24 K L -1.8565
25 A L 0.0000
26 S L -1.1601
27 Q L -2.2045
28 D L -2.9364
29 V L 0.0000
36 G L -1.8022
37 D L -1.7369
38 A L 0.0000
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.0734
45 K L -1.4280
46 P L -1.0112
47 G L -1.4503
48 Q L -2.0681
49 S L -1.3210
50 P L 0.0000
51 K L -1.1049
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0728
56 W L -0.0087
57 A L 0.0000
65 S L -0.5520
66 T L -0.3499
67 R L -1.1862
68 H L -0.7144
69 T L -0.5375
70 G L -0.8348
71 V L -0.9808
72 P L -1.3029
74 D L -2.1599
75 R L -1.8034
76 F L 0.0000
77 T L -0.8236
78 G L 0.0000
79 S L -0.8008
80 G L -1.3063
83 S L -1.7152
84 G L -2.0975
85 T L -2.3515
86 D L -2.6216
87 F L 0.0000
88 T L -0.8073
89 L L 0.0000
90 T L -0.8442
91 I L 0.0000
92 S L -2.3078
93 N L -2.5854
94 V L 0.0000
95 Q L -1.8420
96 S L -1.5896
97 E L -1.8733
98 D L 0.0000
99 L L -0.4942
100 A L 0.0000
101 D L -0.5993
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 T L -0.6335
109 R L -0.4743
114 Y L 0.4342
115 P L -0.3508
116 Y L 0.0000
117 T L 0.0127
118 F L 0.0000
119 G L 0.0000
120 G L -1.1124
121 G L 0.0000
122 T L 0.0000
123 K L -0.6809
124 L L 0.0000
125 E L -0.8250
126 I L -1.1641
127 K L -1.9179
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Laboratory of Theory of Biopolymers 2018