| Chain sequence(s) |
A: QVQLLESGGGLVQAGGSLRLSCAASGFPVYNTNMYWYRQAPGKEREWVAAINSNGEYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDDGWTFWQYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4896 | |
| 2 | V | A | -0.8883 | |
| 3 | Q | A | -0.8952 | |
| 4 | L | A | 0.0000 | |
| 5 | L | A | 0.8203 | |
| 6 | E | A | -0.1642 | |
| 7 | S | A | -0.7547 | |
| 8 | G | A | -1.1116 | |
| 9 | G | A | -0.8989 | |
| 10 | G | A | -0.0856 | |
| 11 | L | A | 0.9236 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3549 | |
| 14 | A | A | -1.5311 | |
| 15 | G | A | -1.4254 | |
| 16 | G | A | -0.9742 | |
| 17 | S | A | -1.2878 | |
| 18 | L | A | -0.9776 | |
| 19 | R | A | -2.1524 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4803 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1718 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7049 | |
| 26 | G | A | -1.0815 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.4575 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 0.1254 | |
| 31 | N | A | -0.4068 | |
| 32 | T | A | 0.0000 | |
| 33 | N | A | -0.8447 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.0015 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.8707 | |
| 38 | R | A | -1.7904 | |
| 39 | Q | A | -2.5610 | |
| 40 | A | A | -2.2750 | |
| 41 | P | A | -1.4683 | |
| 42 | G | A | -1.9786 | |
| 43 | K | A | -3.5797 | |
| 44 | E | A | -3.9360 | |
| 45 | R | A | -3.4739 | |
| 46 | E | A | -3.0740 | |
| 47 | W | A | -1.2192 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -1.1394 | |
| 53 | S | A | -0.9256 | |
| 54 | N | A | -1.7125 | |
| 55 | G | A | -1.4978 | |
| 56 | E | A | -1.7288 | |
| 57 | Y | A | -0.2061 | |
| 58 | T | A | -0.3725 | |
| 59 | H | A | -1.0689 | |
| 60 | Y | A | -1.3370 | |
| 61 | A | A | -1.7275 | |
| 62 | D | A | -2.5704 | |
| 63 | S | A | -1.8116 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7823 | |
| 66 | G | A | -1.8106 | |
| 67 | R | A | -1.5607 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9885 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7230 | |
| 72 | R | A | -1.0915 | |
| 73 | D | A | -1.5566 | |
| 74 | N | A | -1.7275 | |
| 75 | A | A | -1.3257 | |
| 76 | K | A | -2.3207 | |
| 77 | N | A | -1.4410 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6835 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2437 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5136 | |
| 85 | S | A | -1.3126 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5626 | |
| 88 | P | A | -2.0205 | |
| 89 | E | A | -2.4158 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0489 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7220 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4357 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.9256 | |
| 100 | D | A | -1.8332 | |
| 101 | D | A | -2.3706 | |
| 102 | G | A | -0.9497 | |
| 103 | W | A | 0.3024 | |
| 104 | T | A | 0.7797 | |
| 105 | F | A | 2.2004 | |
| 106 | W | A | 1.0860 | |
| 107 | Q | A | -1.0451 | |
| 108 | Y | A | -0.9934 | |
| 109 | D | A | -1.8368 | |
| 110 | Y | A | -0.7724 | |
| 111 | W | A | -0.0997 | |
| 112 | G | A | -0.1389 | |
| 113 | Q | A | -1.0216 | |
| 114 | G | A | -0.6488 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2387 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3775 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.8253 |