Project name: query_structure

Status: done

Started: 2026-03-17 00:18:24
Settings
Chain sequence(s) A: QVQLLESGGGLVQAGGSLRLSCAASGFPVYNTNMYWYRQAPGKEREWVAAINSNGEYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDDGWTFWQYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.936
Maximal score value
2.2004
Average score
-0.8632
Total score value
-103.5889

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4896
2 V A -0.8883
3 Q A -0.8952
4 L A 0.0000
5 L A 0.8203
6 E A -0.1642
7 S A -0.7547
8 G A -1.1116
9 G A -0.8989
10 G A -0.0856
11 L A 0.9236
12 V A 0.0000
13 Q A -1.3549
14 A A -1.5311
15 G A -1.4254
16 G A -0.9742
17 S A -1.2878
18 L A -0.9776
19 R A -2.1524
20 L A 0.0000
21 S A -0.4803
22 C A 0.0000
23 A A -0.1718
24 A A 0.0000
25 S A -0.7049
26 G A -1.0815
27 F A 0.0000
28 P A -0.4575
29 V A 0.0000
30 Y A 0.1254
31 N A -0.4068
32 T A 0.0000
33 N A -0.8447
34 M A 0.0000
35 Y A 0.0015
36 W A 0.0000
37 Y A -0.8707
38 R A -1.7904
39 Q A -2.5610
40 A A -2.2750
41 P A -1.4683
42 G A -1.9786
43 K A -3.5797
44 E A -3.9360
45 R A -3.4739
46 E A -3.0740
47 W A -1.2192
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 N A -1.1394
53 S A -0.9256
54 N A -1.7125
55 G A -1.4978
56 E A -1.7288
57 Y A -0.2061
58 T A -0.3725
59 H A -1.0689
60 Y A -1.3370
61 A A -1.7275
62 D A -2.5704
63 S A -1.8116
64 V A 0.0000
65 K A -2.7823
66 G A -1.8106
67 R A -1.5607
68 F A 0.0000
69 T A -0.9885
70 I A 0.0000
71 S A -0.7230
72 R A -1.0915
73 D A -1.5566
74 N A -1.7275
75 A A -1.3257
76 K A -2.3207
77 N A -1.4410
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6835
81 L A 0.0000
82 Q A -1.2437
83 M A 0.0000
84 N A -1.5136
85 S A -1.3126
86 L A 0.0000
87 K A -2.5626
88 P A -2.0205
89 E A -2.4158
90 D A 0.0000
91 T A -1.0489
92 A A 0.0000
93 V A -0.7220
94 Y A 0.0000
95 Y A -0.4357
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.9256
100 D A -1.8332
101 D A -2.3706
102 G A -0.9497
103 W A 0.3024
104 T A 0.7797
105 F A 2.2004
106 W A 1.0860
107 Q A -1.0451
108 Y A -0.9934
109 D A -1.8368
110 Y A -0.7724
111 W A -0.0997
112 G A -0.1389
113 Q A -1.0216
114 G A -0.6488
115 T A 0.0000
116 Q A -1.2387
117 V A 0.0000
118 T A -0.3775
119 V A 0.0000
120 S A -0.8253
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Laboratory of Theory of Biopolymers 2018