Project name: ECD_304_1st

Status: done

Started: 2024-06-18 21:56:22
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVALVEMLKNIMLATGCTLEESKIKEVLNKPKYIDLALKAQFEYMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLFSLQLKGDLNLSWVMTTCSTKCAREHMPELLEKYSRGIYDGDLKDKVPYKGIEISLKLVEKPCTEGIELKSKRPQLLRELLKKLKKKIEELTKRVTELSKENVGKSIMFAMTPKILKTSSLMPRLGFEKGLELSEKACLNGRCRRTVSMETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEQQLKEGEEIVEKYKKEEKEKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:39)
Show buried residues

Minimal score value
-5.6743
Maximal score value
2.0746
Average score
-1.2025
Total score value
-363.1624

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.6461
2 F A 0.6310
3 T A 0.1582
4 L A 0.0997
5 P A -0.1296
6 P A -1.0129
7 N A -2.0177
8 F A -1.1922
9 G A -1.3809
10 K A -2.2265
11 R A -1.5010
12 P A -0.7210
13 T A -0.5207
14 D A -0.4994
15 L A 0.9790
16 E A 0.5005
17 L A 0.4907
18 S A 1.1156
19 V A 2.0746
20 A A 0.0000
21 L A 1.0249
22 V A 0.9062
23 E A -0.1172
24 M A -0.3202
25 L A 0.1688
26 K A -1.1345
27 N A 0.0000
28 I A 0.0000
29 M A 0.0000
30 L A -0.6440
31 A A 0.0000
32 T A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.3372
36 L A 0.0000
37 E A -3.1458
38 E A -3.4768
39 S A -2.7496
40 K A -2.9921
41 I A 0.0000
42 K A -3.6641
43 E A -3.5970
44 V A 0.0000
45 L A -1.4924
46 N A -2.5713
47 K A -2.4253
48 P A -1.6878
49 K A -1.9854
50 Y A -1.1857
51 I A -1.0648
52 D A -2.3003
53 L A 0.0000
54 A A 0.0000
55 L A -1.1378
56 K A -1.9439
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 E A -2.3499
61 Y A -1.2529
62 M A 0.0000
63 P A 0.0000
64 K A -1.9703
65 T A 0.0000
66 A A 0.0000
67 L A -1.2427
68 E A -2.3342
69 L A 0.0000
70 A A -1.8726
71 K A -2.1815
72 V A 0.0058
73 F A -1.0665
74 R A -2.5627
75 L A -1.9591
76 K A -2.6395
77 N A -1.9265
78 I A -0.3462
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.1216
94 L A 0.0000
95 S A 0.0000
96 N A 0.0000
97 L A 0.2307
98 F A 0.0000
99 S A 0.0000
100 L A -0.4418
101 Q A -1.3338
102 L A 0.0000
103 K A -2.3672
104 G A 0.0000
105 D A 0.0000
106 L A -0.5195
107 N A -1.1293
108 L A 0.0000
109 S A 0.0000
110 W A -0.0327
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A 0.0605
116 S A 0.0000
117 T A 0.0000
118 K A -1.7320
119 C A -1.2600
120 A A 0.0000
121 R A -2.5219
122 E A -3.0454
123 H A -2.4467
124 M A 0.0000
125 P A 0.0000
126 E A -3.2688
127 L A 0.0000
128 L A 0.0000
129 E A -3.5134
130 K A -2.4778
131 Y A -1.4756
132 S A 0.0000
133 R A -2.8790
134 G A -1.6407
135 I A -1.1490
136 Y A -1.5985
137 D A -2.4750
138 G A -2.4574
139 D A -3.5595
140 L A 0.0000
141 K A -3.7519
142 D A -2.9448
143 K A -1.8115
144 V A 0.0000
145 P A -0.9214
146 Y A -0.9109
147 K A -1.6963
148 G A -1.1592
149 I A 0.0000
150 E A -2.2909
151 I A -0.7903
152 S A -0.8902
153 L A -1.5790
154 K A -2.0988
155 L A -1.2352
156 V A 0.0000
157 E A -2.3740
158 K A -3.0503
159 P A -2.2058
160 C A 0.0000
161 T A -2.3538
162 E A -2.9352
163 G A 0.0000
164 I A -2.1993
165 E A -3.1873
166 L A -2.4186
167 K A -2.6060
168 S A -2.7741
169 K A -3.2356
170 R A -3.1073
171 P A -2.3105
172 Q A -2.1933
173 L A -1.1959
174 L A -1.9174
175 R A -3.1232
176 E A -3.4665
177 L A -2.2704
178 L A -2.5560
179 K A -4.2891
180 K A -4.1395
181 L A 0.0000
182 K A -3.9145
183 K A -4.5234
184 K A -3.7853
185 I A -3.1346
186 E A -4.1373
187 E A -4.1003
188 L A -2.4265
189 T A -2.5221
190 K A -3.4069
191 R A -2.8626
192 V A -1.8079
193 T A -2.2163
194 E A -3.3018
195 L A 0.0000
196 S A -2.1307
197 K A -3.5560
198 E A -3.3192
199 N A 0.0000
200 V A -1.3055
201 G A -2.2349
202 K A -1.9534
203 S A -0.2519
204 I A 0.0000
205 M A 0.6418
206 F A 1.6615
207 A A 0.8295
208 M A 0.0000
209 T A -0.0769
210 P A -0.5392
211 K A -1.2088
212 I A 0.0000
213 L A -0.3101
214 K A -1.3817
215 T A 0.0000
216 S A 0.0000
217 S A -1.0646
218 L A -0.4938
219 M A 0.0000
220 P A 0.0000
221 R A -2.0482
222 L A -0.8091
223 G A 0.0000
224 F A 0.0000
225 E A -2.2754
226 K A -1.5431
227 G A 0.0000
228 L A -1.7214
229 E A -2.1575
230 L A 0.0000
231 S A 0.0000
232 E A -2.7309
233 K A -2.3740
234 A A -1.4681
235 C A -0.8765
236 L A 0.0000
237 N A -2.3596
238 G A -2.5750
239 R A -3.1687
240 C A 0.0000
241 R A -2.1652
242 R A -1.7744
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 M A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.8224
255 L A 0.0000
256 C A 0.0000
257 S A -0.4435
258 T A -0.5586
259 I A 0.0000
260 L A 0.0000
261 N A -0.9625
262 V A -0.1587
263 A A 0.0000
264 F A 0.0000
265 P A -0.4875
266 P A -0.8040
267 E A -1.2800
268 V A 0.5116
269 I A 0.0000
270 G A 0.0645
271 P A 0.4363
272 L A 0.0000
273 F A 0.1225
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.0474
278 L A 0.0000
279 Y A 0.0000
280 M A -0.6932
281 E A -1.7983
282 Q A -1.7258
283 Q A 0.0000
284 L A -1.7438
285 K A -3.2762
286 E A -2.8871
287 G A 0.0000
288 E A -3.8649
289 E A -3.9840
290 I A -2.7059
291 V A 0.0000
292 E A -4.7465
293 K A -4.5347
294 Y A -3.9312
295 K A -4.7793
296 K A -5.5444
297 E A -5.6743
298 E A -5.4249
299 K A -5.5287
300 E A -5.4454
301 K A -4.9455
302 E A -4.1972
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018