| Chain sequence(s) |
A: IQLTQSPSSLAVSVGEKITMSCKSSQSLLYSGNQKNYLAWYQQKSGQSPKLLIYWTSTRKSGVPDRFTGSGSGTDFTLTISSVKAEDLAIYYCHQYYTYPWTFGGGTKLEIGGGGSGGGGSGGGGSVQLQQSGPELVKPGASVKMSCKASGYIFTDYYMKWVKQSHGRSLEWIGDINLNNGDTFYNQKFKGRATLTVDKSSSTAYMQLNSLTSEDSAVYYCARSDDYDYGMDYWGQGTTVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:54)
[INFO] Main: Simulation completed successfully. (00:03:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | I | A | 0.2541 | |
| 3 | Q | A | -1.1120 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -0.0923 | |
| 6 | Q | A | -0.1565 | |
| 7 | S | A | -0.2160 | |
| 8 | P | A | -0.2475 | |
| 9 | S | A | -0.2688 | |
| 10 | S | A | -0.2800 | |
| 11 | L | A | 0.2293 | |
| 12 | A | A | -0.1013 | |
| 13 | V | A | 0.0000 | |
| 14 | S | A | -0.0634 | |
| 15 | V | A | 0.1548 | |
| 16 | G | A | -0.6059 | |
| 17 | E | A | -1.3976 | |
| 18 | K | A | -1.9021 | |
| 19 | I | A | 0.0000 | |
| 20 | T | A | -0.0632 | |
| 21 | M | A | 0.0000 | |
| 22 | S | A | -0.0674 | |
| 23 | C | A | 0.0000 | |
| 24 | K | A | -1.7040 | |
| 25 | S | A | 0.0000 | |
| 26 | S | A | -0.3356 | |
| 27 | Q | A | -1.2431 | |
| 28 | S | A | -0.3571 | |
| 29 | L | A | 0.0000 | |
| 30 | L | A | 0.7261 | |
| 31 | Y | A | 0.9656 | |
| 32 | S | A | -0.1350 | |
| 33 | G | A | -0.6071 | |
| 34 | N | A | -0.8591 | |
| 35 | Q | A | -1.4981 | |
| 36 | K | A | -1.3108 | |
| 37 | N | A | 0.0000 | |
| 38 | Y | A | 0.1301 | |
| 39 | L | A | 0.0000 | |
| 40 | A | A | 0.0000 | |
| 41 | W | A | 0.0000 | |
| 42 | Y | A | 0.0000 | |
| 43 | Q | A | 0.0000 | |
| 44 | Q | A | 0.0000 | |
| 45 | K | A | -0.5960 | |
| 46 | S | A | -0.3974 | |
| 47 | G | A | -0.7245 | |
| 48 | Q | A | -1.2921 | |
| 49 | S | A | -0.2658 | |
| 50 | P | A | 0.0000 | |
| 51 | K | A | -1.7000 | |
| 52 | L | A | 0.0000 | |
| 53 | L | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | Y | A | 0.1722 | |
| 56 | W | A | 0.2357 | |
| 57 | T | A | 0.0000 | |
| 58 | S | A | -0.2057 | |
| 59 | T | A | -0.2292 | |
| 60 | R | A | -0.9019 | |
| 61 | K | A | -0.4456 | |
| 62 | S | A | -0.3417 | |
| 63 | G | A | -0.4694 | |
| 64 | V | A | 0.0912 | |
| 65 | P | A | -0.3912 | |
| 66 | D | A | -1.8614 | |
| 67 | R | A | -0.6270 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.0460 | |
| 70 | G | A | 0.0000 | |
| 71 | S | A | -0.2057 | |
| 72 | G | A | -0.3218 | |
| 73 | S | A | -0.2346 | |
| 74 | G | A | -0.0516 | |
| 75 | T | A | -0.3174 | |
| 76 | D | A | -1.6569 | |
| 77 | F | A | 0.0000 | |
| 78 | T | A | -0.0324 | |
| 79 | L | A | 0.0000 | |
| 80 | T | A | -0.0224 | |
| 81 | I | A | 0.0000 | |
| 82 | S | A | -0.3269 | |
| 83 | S | A | -0.3347 | |
| 84 | V | A | 0.0000 | |
| 85 | K | A | -0.5643 | |
| 86 | A | A | -0.3883 | |
| 87 | E | A | -1.8120 | |
| 88 | D | A | 0.0000 | |
| 89 | L | A | 0.7011 | |
| 90 | A | A | 0.0000 | |
| 91 | I | A | 0.1402 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | H | A | 0.0000 | |
| 96 | Q | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | 0.7552 | |
| 99 | T | A | 0.2613 | |
| 100 | Y | A | 0.8275 | |
| 101 | P | A | 0.1955 | |
| 102 | W | A | 0.0000 | |
| 103 | T | A | -0.0161 | |
| 104 | F | A | 0.0000 | |
| 105 | G | A | 0.0000 | |
| 106 | G | A | -0.4775 | |
| 107 | G | A | 0.0000 | |
| 108 | T | A | 0.0000 | |
| 109 | K | A | -1.0390 | |
| 110 | L | A | 0.0000 | |
| 111 | E | A | -1.7355 | |
| 112 | I | A | -0.1803 | |
| 113 | G | A | -0.4273 | |
| 114 | G | A | -0.6205 | |
| 115 | G | A | -0.6048 | |
| 116 | G | A | -0.5904 | |
| 117 | S | A | -0.3823 | |
| 118 | G | A | -0.5917 | |
| 119 | G | A | -0.6390 | |
| 120 | G | A | -0.6380 | |
| 121 | G | A | -0.5918 | |
| 122 | S | A | -0.3841 | |
| 123 | G | A | -0.5916 | |
| 124 | G | A | -0.6389 | |
| 125 | G | A | -0.6385 | |
| 126 | G | A | -0.5920 | |
| 127 | S | A | -0.2560 | |
| 128 | V | A | -0.0807 | |
| 129 | Q | A | -1.1543 | |
| 130 | L | A | 0.0000 | |
| 131 | Q | A | -1.2783 | |
| 132 | Q | A | 0.0000 | |
| 133 | S | A | -0.1181 | |
| 134 | G | A | -0.4581 | |
| 135 | P | A | -0.4156 | |
| 136 | E | A | -0.2078 | |
| 137 | L | A | 1.5065 | |
| 138 | V | A | 0.1986 | |
| 139 | K | A | -1.7054 | |
| 140 | P | A | -0.6468 | |
| 141 | G | A | -0.5402 | |
| 142 | A | A | -0.0924 | |
| 143 | S | A | -0.1820 | |
| 144 | V | A | 0.0000 | |
| 145 | K | A | -1.7453 | |
| 146 | M | A | 0.0000 | |
| 147 | S | A | -0.0240 | |
| 148 | C | A | 0.0000 | |
| 149 | K | A | -0.9187 | |
| 150 | A | A | 0.0000 | |
| 151 | S | A | -0.2033 | |
| 152 | G | A | -0.4203 | |
| 153 | Y | A | 0.4839 | |
| 154 | I | A | 2.0495 | |
| 155 | F | A | 0.0000 | |
| 156 | T | A | -0.5175 | |
| 157 | D | A | -1.7937 | |
| 158 | Y | A | 0.0000 | |
| 159 | Y | A | 0.1806 | |
| 160 | M | A | 0.0000 | |
| 161 | K | A | 0.0000 | |
| 162 | W | A | 0.0000 | |
| 163 | V | A | 0.0000 | |
| 164 | K | A | -0.1997 | |
| 165 | Q | A | -0.1810 | |
| 166 | S | A | -0.2352 | |
| 167 | H | A | -1.0804 | |
| 168 | G | A | -0.9867 | |
| 169 | R | A | -1.9465 | |
| 170 | S | A | -0.4899 | |
| 171 | L | A | 0.0000 | |
| 172 | E | A | -0.6094 | |
| 173 | W | A | 0.0000 | |
| 174 | I | A | 0.0000 | |
| 175 | G | A | 0.0000 | |
| 176 | D | A | 0.0000 | |
| 177 | I | A | 0.0000 | |
| 178 | N | A | -0.2358 | |
| 179 | L | A | 0.0000 | |
| 180 | N | A | -1.5078 | |
| 181 | N | A | -1.5560 | |
| 182 | G | A | -0.8261 | |
| 183 | D | A | -1.7551 | |
| 184 | T | A | -0.1666 | |
| 185 | F | A | 0.9764 | |
| 186 | Y | A | 0.5149 | |
| 187 | N | A | 0.0000 | |
| 188 | Q | A | -1.5028 | |
| 189 | K | A | -1.9146 | |
| 190 | F | A | 0.0000 | |
| 191 | K | A | -1.7842 | |
| 192 | G | A | -0.8724 | |
| 193 | R | A | -0.6274 | |
| 194 | A | A | 0.0000 | |
| 195 | T | A | -0.0632 | |
| 196 | L | A | 0.0000 | |
| 197 | T | A | -0.0133 | |
| 198 | V | A | 0.1264 | |
| 199 | D | A | -0.8685 | |
| 200 | K | A | -1.8530 | |
| 201 | S | A | -0.5356 | |
| 202 | S | A | -0.1368 | |
| 203 | S | A | -0.2259 | |
| 204 | T | A | 0.0000 | |
| 205 | A | A | 0.0000 | |
| 206 | Y | A | 0.2109 | |
| 207 | M | A | 0.0000 | |
| 208 | Q | A | -0.8983 | |
| 209 | L | A | 0.0000 | |
| 210 | N | A | -0.6068 | |
| 211 | S | A | -0.3784 | |
| 212 | L | A | 0.0000 | |
| 213 | T | A | -0.0609 | |
| 214 | S | A | -0.5385 | |
| 215 | E | A | -1.8575 | |
| 216 | D | A | 0.0000 | |
| 217 | S | A | -0.0739 | |
| 218 | A | A | 0.0609 | |
| 219 | V | A | 0.3653 | |
| 220 | Y | A | 0.0000 | |
| 221 | Y | A | 0.0000 | |
| 222 | C | A | 0.0000 | |
| 223 | A | A | 0.0000 | |
| 224 | R | A | 0.0000 | |
| 225 | S | A | 0.0000 | |
| 226 | D | A | 0.0000 | |
| 227 | D | A | -1.5548 | |
| 228 | Y | A | 0.8646 | |
| 229 | D | A | -0.4227 | |
| 230 | Y | A | 0.3300 | |
| 231 | G | A | 0.0000 | |
| 232 | M | A | 0.0000 | |
| 233 | D | A | 0.0000 | |
| 234 | Y | A | 0.3106 | |
| 235 | W | A | 0.0000 | |
| 236 | G | A | 0.0000 | |
| 237 | Q | A | -1.2098 | |
| 238 | G | A | -0.2817 | |
| 239 | T | A | 0.0000 | |
| 240 | T | A | -0.0148 | |
| 241 | V | A | 0.0000 | |
| 242 | T | A | -0.0362 | |
| 243 | V | A | 0.0000 | |
| 244 | S | A | -0.2129 |