Project name: Wildtype_CA125

Status: done

Started: 2026-03-27 16:39:32
Settings
Chain sequence(s) A: IQLTQSPSSLAVSVGEKITMSCKSSQSLLYSGNQKNYLAWYQQKSGQSPKLLIYWTSTRKSGVPDRFTGSGSGTDFTLTISSVKAEDLAIYYCHQYYTYPWTFGGGTKLEIGGGGSGGGGSGGGGSVQLQQSGPELVKPGASVKMSCKASGYIFTDYYMKWVKQSHGRSLEWIGDINLNNGDTFYNQKFKGRATLTVDKSSSTAYMQLNSLTSEDSAVYYCARSDDYDYGMDYWGQGTTVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:56)
Show buried residues

Minimal score value
-1.9465
Maximal score value
2.0495
Average score
-0.2956
Total score value
-71.8277

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 I A 0.2541
3 Q A -1.1120
4 L A 0.0000
5 T A -0.0923
6 Q A -0.1565
7 S A -0.2160
8 P A -0.2475
9 S A -0.2688
10 S A -0.2800
11 L A 0.2293
12 A A -0.1013
13 V A 0.0000
14 S A -0.0634
15 V A 0.1548
16 G A -0.6059
17 E A -1.3976
18 K A -1.9021
19 I A 0.0000
20 T A -0.0632
21 M A 0.0000
22 S A -0.0674
23 C A 0.0000
24 K A -1.7040
25 S A 0.0000
26 S A -0.3356
27 Q A -1.2431
28 S A -0.3571
29 L A 0.0000
30 L A 0.7261
31 Y A 0.9656
32 S A -0.1350
33 G A -0.6071
34 N A -0.8591
35 Q A -1.4981
36 K A -1.3108
37 N A 0.0000
38 Y A 0.1301
39 L A 0.0000
40 A A 0.0000
41 W A 0.0000
42 Y A 0.0000
43 Q A 0.0000
44 Q A 0.0000
45 K A -0.5960
46 S A -0.3974
47 G A -0.7245
48 Q A -1.2921
49 S A -0.2658
50 P A 0.0000
51 K A -1.7000
52 L A 0.0000
53 L A 0.0000
54 I A 0.0000
55 Y A 0.1722
56 W A 0.2357
57 T A 0.0000
58 S A -0.2057
59 T A -0.2292
60 R A -0.9019
61 K A -0.4456
62 S A -0.3417
63 G A -0.4694
64 V A 0.0912
65 P A -0.3912
66 D A -1.8614
67 R A -0.6270
68 F A 0.0000
69 T A -0.0460
70 G A 0.0000
71 S A -0.2057
72 G A -0.3218
73 S A -0.2346
74 G A -0.0516
75 T A -0.3174
76 D A -1.6569
77 F A 0.0000
78 T A -0.0324
79 L A 0.0000
80 T A -0.0224
81 I A 0.0000
82 S A -0.3269
83 S A -0.3347
84 V A 0.0000
85 K A -0.5643
86 A A -0.3883
87 E A -1.8120
88 D A 0.0000
89 L A 0.7011
90 A A 0.0000
91 I A 0.1402
92 Y A 0.0000
93 Y A 0.0000
94 C A 0.0000
95 H A 0.0000
96 Q A 0.0000
97 Y A 0.0000
98 Y A 0.7552
99 T A 0.2613
100 Y A 0.8275
101 P A 0.1955
102 W A 0.0000
103 T A -0.0161
104 F A 0.0000
105 G A 0.0000
106 G A -0.4775
107 G A 0.0000
108 T A 0.0000
109 K A -1.0390
110 L A 0.0000
111 E A -1.7355
112 I A -0.1803
113 G A -0.4273
114 G A -0.6205
115 G A -0.6048
116 G A -0.5904
117 S A -0.3823
118 G A -0.5917
119 G A -0.6390
120 G A -0.6380
121 G A -0.5918
122 S A -0.3841
123 G A -0.5916
124 G A -0.6389
125 G A -0.6385
126 G A -0.5920
127 S A -0.2560
128 V A -0.0807
129 Q A -1.1543
130 L A 0.0000
131 Q A -1.2783
132 Q A 0.0000
133 S A -0.1181
134 G A -0.4581
135 P A -0.4156
136 E A -0.2078
137 L A 1.5065
138 V A 0.1986
139 K A -1.7054
140 P A -0.6468
141 G A -0.5402
142 A A -0.0924
143 S A -0.1820
144 V A 0.0000
145 K A -1.7453
146 M A 0.0000
147 S A -0.0240
148 C A 0.0000
149 K A -0.9187
150 A A 0.0000
151 S A -0.2033
152 G A -0.4203
153 Y A 0.4839
154 I A 2.0495
155 F A 0.0000
156 T A -0.5175
157 D A -1.7937
158 Y A 0.0000
159 Y A 0.1806
160 M A 0.0000
161 K A 0.0000
162 W A 0.0000
163 V A 0.0000
164 K A -0.1997
165 Q A -0.1810
166 S A -0.2352
167 H A -1.0804
168 G A -0.9867
169 R A -1.9465
170 S A -0.4899
171 L A 0.0000
172 E A -0.6094
173 W A 0.0000
174 I A 0.0000
175 G A 0.0000
176 D A 0.0000
177 I A 0.0000
178 N A -0.2358
179 L A 0.0000
180 N A -1.5078
181 N A -1.5560
182 G A -0.8261
183 D A -1.7551
184 T A -0.1666
185 F A 0.9764
186 Y A 0.5149
187 N A 0.0000
188 Q A -1.5028
189 K A -1.9146
190 F A 0.0000
191 K A -1.7842
192 G A -0.8724
193 R A -0.6274
194 A A 0.0000
195 T A -0.0632
196 L A 0.0000
197 T A -0.0133
198 V A 0.1264
199 D A -0.8685
200 K A -1.8530
201 S A -0.5356
202 S A -0.1368
203 S A -0.2259
204 T A 0.0000
205 A A 0.0000
206 Y A 0.2109
207 M A 0.0000
208 Q A -0.8983
209 L A 0.0000
210 N A -0.6068
211 S A -0.3784
212 L A 0.0000
213 T A -0.0609
214 S A -0.5385
215 E A -1.8575
216 D A 0.0000
217 S A -0.0739
218 A A 0.0609
219 V A 0.3653
220 Y A 0.0000
221 Y A 0.0000
222 C A 0.0000
223 A A 0.0000
224 R A 0.0000
225 S A 0.0000
226 D A 0.0000
227 D A -1.5548
228 Y A 0.8646
229 D A -0.4227
230 Y A 0.3300
231 G A 0.0000
232 M A 0.0000
233 D A 0.0000
234 Y A 0.3106
235 W A 0.0000
236 G A 0.0000
237 Q A -1.2098
238 G A -0.2817
239 T A 0.0000
240 T A -0.0148
241 V A 0.0000
242 T A -0.0362
243 V A 0.0000
244 S A -0.2129
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Laboratory of Theory of Biopolymers 2018