Project name: f87e872f6227a00

Status: done

Started: 2025-08-10 19:01:06
Settings
Chain sequence(s) A: AIITVTPKSFGSPGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYFTEL
H: QVQLVESGGGVVQPGRSLRLSCVASGFTFSSYGMHWVRQAPGKGLEWVAIIWYDGSNKYYADSVKGRFTISRDNSKNTQYLQMNSLRAEDTAVYYCASVATSGDFDYYGMDVWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERTTLSCRASQRISTYLAWYQQKPGQAPRLLIYDASKRATGIPARFSGSGSGTGFTLTISSLEPEDFAVYYCQQRSNWPLTFGGGTKVEIK
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:14)
Show buried residues

Minimal score value
-3.0161
Maximal score value
2.1013
Average score
-0.5441
Total score value
-169.745

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 1.0771
2 I A 2.0287
3 I A 1.1231
4 T A 0.5573
5 V A 0.0830
6 T A -0.4337
7 P A -0.5298
8 K A -0.9442
9 S A -0.1023
10 F A 0.9605
11 G A 0.0695
12 S A -0.3148
13 P A -0.4996
14 G A -0.4511
15 S A 0.1838
16 L A 1.1579
17 G A -0.1703
18 K A -0.7514
19 L A 0.0000
20 L A -0.3976
21 C A 0.0000
22 E A -0.4181
23 V A 0.0000
24 T A 0.7970
25 P A 0.8284
26 V A 0.9471
27 S A -0.1104
28 G A -0.8380
29 Q A -2.0441
30 E A -1.4138
31 R A -1.5263
32 F A -0.3693
33 V A 0.0072
34 W A 0.0000
35 S A 0.0000
36 S A 0.0000
37 L A -0.2035
38 D A -1.6348
39 T A -0.9713
40 P A -0.4303
41 S A 0.0000
42 Q A 0.0000
43 R A 0.3050
44 S A 0.0000
45 F A 0.1614
46 S A -0.1383
47 G A -0.2492
48 P A -0.3578
49 W A -0.1301
50 L A 0.0000
51 E A -1.1405
52 A A -1.0700
53 Q A -1.2019
54 E A -1.7321
55 A A -0.6800
56 Q A 0.0000
57 L A 0.2140
58 L A 0.8467
59 S A 0.0000
60 Q A -0.0086
61 P A 0.4985
62 W A 0.0000
63 Q A 0.3624
64 C A 0.0000
65 Q A 0.1195
66 L A 0.0000
67 Y A -0.7872
68 Q A -1.6225
69 G A -2.1178
70 E A -2.7066
71 R A -2.2576
72 L A 0.1692
73 L A 0.1859
74 G A 0.3260
75 A A 0.4934
76 A A 0.3310
77 V A 1.0913
78 Y A 1.4873
79 F A 2.1013
80 T A 0.6593
81 E A -0.2371
82 L A 1.1600
83 Q H -1.3797
84 V H -0.9394
85 Q H -0.9896
86 L H 0.0000
87 V H 0.5839
88 E H 0.0000
89 S H -0.3718
90 G H -0.8274
91 G H -0.3508
92 G H 0.3002
93 V H 1.2265
94 V H 0.0000
95 Q H -1.6924
96 P H -1.8715
97 G H -2.1416
98 R H -2.8084
99 S H -2.1398
100 L H -2.0028
101 R H -2.2498
102 L H 0.0000
103 S H 0.0000
104 C H 0.0000
105 V H 0.5358
106 A H 0.0000
107 S H -0.4136
108 G H -0.8544
109 F H -0.0691
110 T H 0.2673
111 F H 0.3054
112 S H -0.4097
113 S H -0.0988
114 Y H 0.2458
115 G H 0.0000
116 M H 0.0000
117 H H 0.0000
118 W H 0.0000
119 V H 0.0000
120 R H 0.0000
121 Q H 0.0000
122 A H -0.9375
123 P H -0.8983
124 G H -1.0660
125 K H -1.5068
126 G H -0.7797
127 L H 0.0000
128 E H -0.5288
129 W H 0.0000
130 V H 0.0000
131 A H 0.0000
132 I H 0.0000
133 I H 0.0000
134 W H 0.0000
135 Y H -0.6532
136 D H -1.9201
137 G H -1.3728
138 S H -0.3771
139 N H 0.0000
140 K H -0.7877
141 Y H -0.4994
142 Y H -0.9593
143 A H -1.1973
144 D H -2.5131
145 S H -2.0203
146 V H 0.0000
147 K H -2.6076
148 G H -1.9982
149 R H -2.1225
150 F H 0.0000
151 T H -1.1408
152 I H 0.0000
153 S H -0.5280
154 R H -1.1588
155 D H -1.7341
156 N H -1.6351
157 S H -1.4560
158 K H -2.1817
159 N H -1.2942
160 T H -0.6177
161 Q H 0.0000
162 Y H -0.2751
163 L H 0.0000
164 Q H -1.6324
165 M H 0.0000
166 N H -2.4103
167 S H -2.1016
168 L H 0.0000
169 R H -3.0161
170 A H -1.9297
171 E H -2.7026
172 D H 0.0000
173 T H -0.6801
174 A H 0.0000
175 V H -0.1174
176 Y H 0.0000
177 Y H 0.0000
178 C H 0.0000
179 A H 0.0000
180 S H 0.0000
181 V H 0.0000
182 A H 0.0000
183 T H -0.1988
184 S H -0.4726
185 G H -0.9494
186 D H -1.0910
187 F H 0.8329
188 D H 0.0533
189 Y H -0.1831
190 Y H 0.0000
191 G H 0.0000
192 M H 0.0000
193 D H -1.5968
194 V H -1.0048
195 W H 0.0000
196 G H 0.0000
197 Q H -1.3128
198 G H -0.6769
199 T H -0.2920
200 T H 0.1812
201 V H 0.0000
202 T H 0.0054
203 V H 0.0000
204 S H -0.4443
205 S H -0.3753
206 E L -2.1101
207 I L 0.0000
208 V L -0.6569
209 L L -0.5712
210 T L -0.7011
211 Q L -1.2676
212 S L -0.8887
213 P L -0.7249
214 A L -0.3524
215 T L -0.3081
216 L L 0.0695
217 S L -0.4634
218 L L -0.7766
219 S L -1.3507
220 P L -1.6730
221 G L -1.3971
222 E L -1.9854
223 R L -2.5486
224 T L -1.1504
225 T L -0.5836
226 L L 0.0000
227 S L -0.7034
228 C L -1.0111
229 R L -2.3800
230 A L -1.8437
231 S L -1.5448
232 Q L -2.2573
233 R L -2.7697
234 I L 0.0000
235 S L -0.7276
236 T L -0.4413
237 Y L 0.0000
238 L L 0.0000
239 A L 0.0000
240 W L 0.0000
241 Y L 0.0000
242 Q L 0.0000
243 Q L 0.0000
244 K L -1.3624
245 P L -0.8671
246 G L -1.3419
247 Q L -2.0302
248 A L -1.5209
249 P L 0.0000
250 R L -2.3347
251 L L 0.0000
252 L L 0.0000
253 I L 0.0000
254 Y L -1.4014
255 D L -1.8595
256 A L 0.0000
257 S L -1.7580
258 K L -2.5497
259 R L -2.0568
260 A L 0.0000
261 T L -0.9980
262 G L -0.5428
263 I L -0.7043
264 P L -0.3479
265 A L -0.3532
266 R L -0.8356
267 F L 0.0000
268 S L -0.9523
269 G L -1.0662
270 S L -0.9755
271 G L -1.0331
272 S L -1.2133
273 G L -1.5472
274 T L -1.8288
275 G L -1.4829
276 F L 0.0000
277 T L -0.6532
278 L L 0.0000
279 T L -0.6596
280 I L 0.0000
281 S L -1.4047
282 S L -1.7202
283 L L 0.0000
284 E L -2.0235
285 P L -1.7364
286 E L -2.0407
287 D L 0.0000
288 F L -0.6242
289 A L 0.0000
290 V L -0.1855
291 Y L 0.0000
292 Y L 0.0000
293 C L -0.2615
294 Q L 0.0000
295 Q L -0.4127
296 R L 0.0000
297 S L -0.0071
298 N L 0.0000
299 W L 0.6535
300 P L 0.4194
301 L L 0.4574
302 T L 0.0429
303 F L 0.0000
304 G L -0.0989
305 G L -0.4399
306 G L -0.4037
307 T L -0.3460
308 K L -0.5388
309 V L 0.0000
310 E L -0.9419
311 I L -1.3213
312 K L -1.7282
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Laboratory of Theory of Biopolymers 2018