Project name: CUR-TS-PCa001_VH_PSMA_J591_T1

Status: done

Started: 2026-04-07 22:16:43
Settings
Chain sequence(s) A: EVQLVESGGGLVQPGGSLRLSCAASGYSFTSYWWVRQAPGKGLEWVSIYPGNGDSRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARLTGRYFDYWGWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-2.8652
Maximal score value
1.9458
Average score
-0.4276
Total score value
-46.1778

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.8206
2 V A -0.5785
3 Q A -0.8808
4 L A 0.0000
5 V A 1.1278
6 E A 0.0000
7 S A -0.1935
8 G A -0.6367
9 G A 0.1362
10 G A 0.6766
11 L A 1.3387
12 V A 0.0000
13 Q A -1.3871
14 P A -1.6438
15 G A -1.3955
16 G A -0.9558
17 S A -1.3334
18 L A -1.1273
19 R A -2.2451
20 L A 0.0000
21 S A -0.5871
22 C A 0.0000
23 A A -0.1599
24 A A 0.0000
25 S A -0.6560
26 G A -0.3802
27 Y A 1.1692
28 S A 0.9819
29 F A 1.9458
30 T A 0.7253
31 S A 0.7988
32 Y A 0.0000
33 W A 0.8717
34 W A 0.0000
35 V A 0.0000
36 R A -0.3276
37 Q A -0.7638
38 A A -1.2395
39 P A -1.2452
40 G A -1.4647
41 K A -2.2912
42 G A -1.2126
43 L A -0.0437
44 E A -0.8443
45 W A 0.4236
46 V A 0.0000
47 S A 0.0000
48 I A 1.2151
49 Y A 0.9771
50 P A -0.3289
51 G A -0.9646
52 N A -1.3099
53 G A -1.2094
54 D A -1.5790
55 S A -1.2458
56 R A -1.0747
57 F A 0.0000
58 T A -1.0351
59 I A 0.0000
60 S A -1.2745
61 R A -2.8330
62 D A -2.7358
63 N A -2.6791
64 S A -2.2085
65 K A -2.8652
66 N A -2.0922
67 T A 0.0000
68 L A 0.0000
69 Y A -1.1504
70 L A 0.0000
71 Q A -1.5544
72 M A 0.0000
73 N A -1.4742
74 S A -1.1641
75 L A 0.0000
76 R A -2.3599
77 A A -1.8035
78 E A -2.2848
79 D A 0.0000
80 T A -0.4851
81 A A 0.0000
82 V A 0.7697
83 Y A 0.0000
84 Y A 0.5858
85 C A 0.0000
86 A A 0.0000
87 R A 0.0000
88 L A 0.6053
89 T A 0.6201
90 G A -0.5924
91 R A -1.2863
92 Y A 0.3913
93 F A 0.5509
94 D A -0.5849
95 Y A 0.8466
96 W A 0.9138
97 G A 0.4791
98 W A 0.7188
99 G A 0.0466
100 Q A -0.6077
101 G A 0.0000
102 T A 0.6159
103 L A 1.5680
104 V A 0.0000
105 T A 0.3221
106 V A 0.0000
107 S A -0.5043
108 S A -0.8980
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Laboratory of Theory of Biopolymers 2018