Project name: dd23

Status: done

Started: 2025-07-16 02:12:38
Settings
Chain sequence(s) A: LVFFAEDVGSNKGAIIGLMVGGVVIA
C: LVFFAEDVGSNKGAIIGLMVGGVVIA
B: LVFFAEDVGSNKGAIIGLMVGGVVIA
E: LVFFAEDVGSNKGAIIGLMVGGVVIA
D: LVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,C,B,E,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-2.434
Maximal score value
4.0058
Average score
0.916
Total score value
119.0736

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
17 L A 3.1723
18 V A 3.1333
19 F A 2.4928
20 F A 1.8802
21 A A 0.2748
22 E A -1.1192
23 D A -0.7187
24 V A 0.2304
25 G A -1.0131
26 S A -1.3105
27 N A -2.4340
28 K A -2.3834
29 G A -0.5324
30 A A 0.9483
31 I A 2.8917
32 I A 2.5048
33 G A 1.8742
34 L A 1.7911
35 M A 2.2886
36 V A 2.1930
37 G A 1.1071
38 G A 1.0404
39 V A 2.2340
40 V A 3.0420
41 I A 2.9415
42 A A 1.5029
17 L B 3.4703
18 V B 3.2293
19 F B 0.0000
20 F B 1.1830
21 A B 0.0000
22 E B -0.6140
23 D B 0.0000
24 V B 0.5958
25 G B 0.0000
26 S B -0.9341
27 N B -1.9602
28 K B 0.0000
29 G B 0.0000
30 A B 1.4238
31 I B 3.0174
32 I B 0.0000
33 G B 1.4720
34 L B 0.0000
35 M B 1.4366
36 V B 0.0000
37 G B 0.7465
38 G B 1.0760
39 V B 1.7275
40 V B 0.0000
41 I B 2.4672
42 A B 1.3542
17 L C 3.3828
18 V C 3.0270
19 F C 0.0000
20 F C 1.4608
21 A C 0.0000
22 E C -0.6411
23 D C 0.0000
24 V C 0.8593
25 G C 0.0000
26 S C -0.6885
27 N C -1.7182
28 K C 0.0000
29 G C 0.4217
30 A C 1.5597
31 I C 2.9315
32 I C 0.0000
33 G C 0.8189
34 L C 0.0000
35 M C 0.9310
36 V C 0.0000
37 G C 0.4532
38 G C 0.0000
39 V C 1.5484
40 V C 2.4130
41 I C 2.1484
42 A C 1.1718
17 L D 2.8697
18 V D 3.3303
19 F D 0.0000
20 F D 1.7467
21 A D 0.2367
22 E D -0.8230
23 D D 0.0000
24 V D 0.1914
25 G D 0.0000
26 S D -0.6865
27 N D -1.4949
28 K D 0.0000
29 G D 0.5255
30 A D 1.5636
31 I D 2.7845
32 I D 0.0000
33 G D 1.0548
34 L D 0.0000
35 M D 0.9254
36 V D 0.0000
37 G D 0.8246
38 G D 0.0000
39 V D 2.0533
40 V D 2.7952
41 I D 2.7354
42 A D 1.4664
17 L E 3.3893
18 V E 4.0058
19 F E 3.5770
20 F E 2.7351
21 A E 0.2801
22 E E -1.7202
23 D E -1.4885
24 V E 0.3785
25 G E -0.3232
26 S E -0.6584
27 N E -1.6582
28 K E -0.3171
29 G E 0.4401
30 A E 1.2582
31 I E 2.7937
32 I E 1.6402
33 G E 0.8592
34 L E 0.5813
35 M E 1.2448
36 V E 1.0933
37 G E 0.6002
38 G E 0.0000
39 V E 2.7764
40 V E 2.7938
41 I E 3.2241
42 A E 1.6659
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Laboratory of Theory of Biopolymers 2018