Project name: query_structure

Status: done

Started: 2026-03-16 23:04:02
Settings
Chain sequence(s) A: GSLCGDTCFVLGCNDSSCSCNYPICVKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-2.0343
Maximal score value
3.5912
Average score
0.2589
Total score value
7.2499

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.1660
2 S A -0.2231
3 L A 0.9608
4 C A -0.1305
5 G A -0.1767
6 D A 0.2235
7 T A 1.4940
8 C A 0.0000
9 F A 3.4943
10 V A 3.5912
11 L A 2.7452
12 G A 1.2945
13 C A -0.1417
14 N A -1.7425
15 D A -1.9589
16 S A -1.2095
17 S A -1.2489
18 C A 0.0000
19 S A -0.5566
20 C A 0.4656
21 N A 0.1033
22 Y A 1.6669
23 P A 1.5729
24 I A 1.5082
25 C A 0.0000
26 V A 0.0644
27 K A -1.3462
28 D A -2.0343
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Laboratory of Theory of Biopolymers 2018