Project name: Nb_1_Ayse

Status: done

Started: 2025-07-24 13:27:19
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGDSNFDFSEYSLGWFRQAPGQGLEAVAAISADGSETYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAGPSVLFNPLSPEEYEYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Minimal score value
-3.1961
Maximal score value
1.9249
Average score
-0.7061
Total score value
-90.3774

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.1523
2 V A -1.9781
3 Q A -1.2641
4 L A 0.0000
5 V A 0.7126
6 E A 0.0000
7 S A -0.2650
8 G A -0.8939
9 G A 0.0414
10 G A 0.6467
11 L A 1.4116
12 V A -0.1210
13 Q A -1.4371
14 P A -1.7952
15 G A -1.5215
16 G A -1.0046
17 S A -1.3060
18 L A -0.9344
19 R A -2.1771
20 L A 0.0000
21 S A -0.4883
22 C A 0.0000
23 A A -0.2694
24 A A 0.0000
25 S A -1.5323
26 G A -2.4945
27 D A -3.1721
28 S A -2.2573
29 N A -2.5981
30 F A 0.0000
31 D A -3.1961
32 F A 0.0000
33 S A -2.3824
34 E A -2.5660
35 Y A -1.1891
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.7198
43 A A -0.9841
44 P A -0.9983
45 G A -1.2790
46 Q A -1.8122
47 G A -1.1306
48 L A -0.1914
49 E A -0.5143
50 A A 0.0000
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 S A 0.0000
56 A A 0.0000
57 D A -2.7165
58 G A -1.9165
59 S A -1.7026
60 E A -2.0681
61 T A -0.7348
62 Y A -0.2928
63 Y A -0.7145
64 A A 0.0000
65 D A -2.4636
66 S A -1.7994
67 V A 0.0000
68 K A -2.5785
69 G A -1.7499
70 R A -1.5223
71 F A 0.0000
72 T A -0.8014
73 I A 0.0000
74 S A -0.4224
75 R A -1.3579
76 D A -1.8808
77 N A -2.6820
78 S A -1.7962
79 K A -2.5381
80 N A -2.1697
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6346
84 L A 0.0000
85 Q A -1.2598
86 M A 0.0000
87 N A -1.5186
88 S A -1.3867
89 L A 0.0000
90 R A -2.9075
91 A A -2.0216
92 E A -2.4625
93 D A 0.0000
94 T A -0.5213
95 A A 0.0000
96 V A 0.9076
97 Y A 0.0000
98 Y A 0.3577
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 G A 0.0000
103 P A -0.0189
104 S A 0.2639
105 V A 1.9249
106 L A 1.6350
107 F A 0.8184
108 N A 0.0079
109 P A 0.4665
110 L A 0.9089
111 S A -0.2122
112 P A -0.9681
113 E A -2.2581
114 E A -1.2396
115 Y A 0.0000
116 E A -2.0311
117 Y A -0.9175
118 W A -0.0958
119 G A -0.1320
120 Q A -0.8657
121 G A 0.0000
122 T A 0.6531
123 L A 1.7615
124 V A 0.0000
125 T A 0.3268
126 V A 0.0000
127 S A -0.7446
128 S A -0.4921
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Laboratory of Theory of Biopolymers 2018