Project name: 6MHR VHVL

Status: done

Started: 2026-03-30 05:22:51
Settings
Chain sequence(s) H: QVQLQQWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQSPEKGLEWIGEINHGGYVTYNPSLESRVTISVDTSKNQFSLKLSSVTAADTAVYYCARDYGPGNYDWYFDLWGRGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPALTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-2.836
Maximal score value
1.5245
Average score
-0.5042
Total score value
-115.9596

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3903
2 V H -0.7983
3 Q H -1.4639
4 L H 0.0000
5 Q H -1.2407
6 Q H -0.8837
7 W H 0.0023
8 G H 0.0956
9 A H 0.4758
11 G H 0.9365
12 L H 1.3598
13 L H -0.1665
14 K H -1.4829
15 P H -1.3019
16 S H -1.2243
17 E H -1.6860
18 T H -1.2078
19 L H 0.0000
20 S H -0.7115
21 L H 0.0000
22 T H -0.2853
23 C H 0.0000
24 A H 0.0000
25 V H 0.0000
26 Y H 0.1629
27 G H -0.6438
28 G H -0.8162
29 S H -0.5052
30 F H 0.0000
35 S H -0.7872
36 G H -0.4911
37 Y H 0.0933
38 Y H 0.2705
39 W H 0.0000
40 S H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.5305
45 S H 0.0000
46 P H -1.6721
47 E H -2.8360
48 K H -2.7867
49 G H -1.6481
50 L H 0.0000
51 E H 0.0000
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 N H -0.1624
58 H H -1.0602
59 G H -0.5957
63 G H -0.0035
64 Y H 1.1554
65 V H 0.9898
66 T H 0.2759
67 Y H -0.4287
68 N H -0.7754
69 P H -1.2698
70 S H -0.8886
71 L H 0.0000
72 E H -2.0066
74 S H -1.2891
75 R H -1.3559
76 V H 0.0000
77 T H -0.8223
78 I H 0.0000
79 S H -0.2169
80 V H -0.5218
81 D H -1.5088
82 T H -1.5278
83 S H -1.3930
84 K H -2.2938
85 N H -1.6145
86 Q H -1.2926
87 F H 0.0000
88 S H -0.4084
89 L H 0.0000
90 K H -1.2592
91 L H 0.0000
92 S H -0.9914
93 S H -0.9544
94 V H 0.0000
95 T H -0.5712
96 A H -0.2279
97 A H -0.4144
98 D H 0.0000
99 T H 0.4373
100 A H 0.0000
101 V H 0.7014
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.1677
107 D H 0.0000
108 Y H -0.0134
109 G H -0.4880
110 P H -0.7347
111 G H -1.1293
111A N H -1.4442
112A Y H -0.6390
112 D H -0.3949
113 W H -0.0092
114 Y H 0.0000
115 F H 0.0000
116 D H -0.8008
117 L H -0.6460
118 W H 0.0000
119 G H 0.0000
120 R H -2.3646
121 G H -0.8746
122 T H 0.2718
123 L H 1.5245
124 V H 0.0000
125 T H 0.6586
126 V H 0.0000
127 S H -0.3986
128 S H -0.7261
1 E L -1.4810
2 I L 0.0000
3 V L 0.6870
4 L L 0.0000
5 T L -0.6373
6 Q L -0.6826
7 S L -0.7416
8 P L -0.3806
9 A L -0.3749
10 T L -0.4342
11 L L -0.0666
12 S L -0.1406
13 L L -0.5180
14 S L -0.9107
15 P L -1.3180
16 G L -1.6944
17 E L -2.3941
18 R L -2.5805
19 A L 0.0000
20 T L -0.6707
21 L L 0.0000
22 S L -0.8515
23 C L 0.0000
24 R L -2.3490
25 A L 0.0000
26 S L -1.0450
27 Q L -1.7597
28 S L -1.3103
29 V L 0.0000
36 S L -0.5787
37 S L -0.3143
38 Y L 0.2098
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3973
46 P L -1.0167
47 G L -1.5142
48 Q L -2.1492
49 A L -1.4067
50 P L 0.0000
51 R L -1.1297
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4130
56 D L -0.5646
57 A L 0.0000
65 S L -0.9533
66 N L -1.4447
67 R L -1.4160
68 A L -1.0131
69 T L -0.7056
70 G L -0.6477
71 I L 0.0000
72 P L -0.4246
74 A L -0.3570
75 R L -0.6683
76 F L 0.0000
77 S L -0.7073
78 G L -0.7169
79 S L -0.7671
80 G L -1.0616
83 S L -0.9836
84 G L -1.1040
85 T L -1.7339
86 D L -2.0879
87 F L 0.0000
88 T L -0.7528
89 L L 0.0000
90 T L -0.6031
91 I L 0.0000
92 S L -1.2623
93 S L -1.5726
94 L L 0.0000
95 E L -1.8857
96 P L -1.1745
97 E L -1.8940
98 D L 0.0000
99 F L -0.2624
100 A L 0.0000
101 V L -0.1092
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L 0.0000
108 S L -0.4680
109 N L -0.6998
110 W L 0.1705
113 P L -0.3055
114 P L -0.5404
115 A L 0.0000
116 L L 0.0000
117 T L 0.0364
118 F L 0.0000
119 G L 0.0000
120 G L -0.8379
121 G L -0.4740
122 T L 0.0000
123 K L -0.9763
124 V L 0.0000
125 E L 0.0588
126 I L 1.0374
127 K L -0.8887
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Laboratory of Theory of Biopolymers 2018