Project name: REST_test

Status: done

Started: 2025-02-03 06:09:22
Settings
Chain sequence(s) A: SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
P: QPPVPPQRPM
input PDB
Selected Chain(s) A,P
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues QA7P
Energy difference between WT (input) and mutated protein (by FoldX) 0.301865 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:43)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:46)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-2.1064
Maximal score value
1.7549
Average score
-0.506
Total score value
-32.8888

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 S A -0.3161
6 A A -0.1070
7 V A 0.0000
8 K A -0.5038
9 A A 0.0000
10 L A 0.4884
11 F A -0.1396
12 D A -1.9438
13 Y A 0.0000
14 K A -1.7038
15 A A -0.5275
16 Q A -1.4038
17 R A -1.6764
18 E A -2.1064
19 D A -0.7591
20 E A 0.0000
21 L A 0.0000
22 T A -0.2467
23 F A 0.0000
24 T A -0.6537
25 K A -1.9128
26 S A -0.4847
27 A A 0.0000
28 I A 1.3771
29 I A 0.0000
30 Q A -0.9166
31 N A -1.2521
32 V A -0.3565
33 E A -1.9734
34 K A -1.7600
35 Q A -1.7599
36 D A -2.1009
37 G A -0.8254
38 G A -0.2027
39 W A 0.0000
40 W A -0.0687
41 R A -0.5283
42 G A 0.0000
43 D A -0.4561
44 Y A 0.2384
45 G A -0.4843
46 G A -0.6762
47 K A -1.0778
48 K A -1.9140
49 Q A -0.6513
50 L A 0.1798
51 W A 0.1751
52 F A 0.0000
53 P A 0.0000
54 S A -0.1535
55 N A -0.6563
56 Y A 0.0000
57 V A 0.0000
58 E A -1.7244
59 E A -2.0722
1 Q P -1.2441
2 P P -0.4807
3 P P 0.2228
4 V P 1.7549
5 P P 0.2618
6 P P -0.1074
7 A P -0.0431 mutated: QA7P
8 R P -0.4802
9 P P -0.1425
10 M P 1.0067
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Laboratory of Theory of Biopolymers 2018