| Chain sequence(s) |
H: EVQLQQSGPELVKPGASVKIPCKASGYTFSDYNIDWVKQSQGKSPEWIGDINPNFGTTIYNQKFKGKATLTVDKSSNTAYMELRSLTSEDTAVYYCAKLQYGGGYWGQGTTLTVSS
L: DIQMNQSPSSLSASLGDTITITCHASQNINIWLTWYQQKPGNIPKLLIYKASNLPTGVPSRFSGSGSGTRFTLTISSLQPEDIATYYCQQGQSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:12)
[INFO] Main: Simulation completed successfully. (00:01:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1766 | |
| 2 | V | H | -1.3379 | |
| 3 | Q | H | -2.1143 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1399 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0521 | |
| 8 | G | H | -0.7903 | |
| 9 | P | H | -0.2922 | |
| 11 | E | H | 0.0798 | |
| 12 | L | H | 1.0116 | |
| 13 | V | H | -0.1022 | |
| 14 | K | H | -1.6799 | |
| 15 | P | H | -1.5112 | |
| 16 | G | H | -1.2614 | |
| 17 | A | H | -1.0629 | |
| 18 | S | H | -1.2656 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.6351 | |
| 21 | I | H | 0.0000 | |
| 22 | P | H | -0.8254 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.7276 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.4170 | |
| 27 | G | H | -1.2813 | |
| 28 | Y | H | -0.7685 | |
| 29 | T | H | -0.7164 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.1814 | |
| 36 | D | H | -1.8860 | |
| 37 | Y | H | -0.9956 | |
| 38 | N | H | -0.8476 | |
| 39 | I | H | 0.0000 | |
| 40 | D | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.7275 | |
| 45 | S | H | -1.1611 | |
| 46 | Q | H | -1.6318 | |
| 47 | G | H | -1.4348 | |
| 48 | K | H | -1.4523 | |
| 49 | S | H | -0.9131 | |
| 50 | P | H | 0.0000 | |
| 51 | E | H | -0.7917 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | D | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.1484 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -0.5396 | |
| 62 | F | H | 1.4288 | |
| 63 | G | H | 0.1780 | |
| 64 | T | H | 0.4366 | |
| 65 | T | H | 0.4925 | |
| 66 | I | H | 0.6303 | |
| 67 | Y | H | -0.4899 | |
| 68 | N | H | -1.5235 | |
| 69 | Q | H | -2.6137 | |
| 70 | K | H | -2.9099 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.7243 | |
| 74 | G | H | -1.9861 | |
| 75 | K | H | -1.7382 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7846 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2888 | |
| 80 | V | H | -0.3824 | |
| 81 | D | H | -1.3578 | |
| 82 | K | H | -1.8484 | |
| 83 | S | H | -1.1015 | |
| 84 | S | H | -1.0521 | |
| 85 | N | H | -1.3327 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2787 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.0952 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.3944 | |
| 93 | S | H | -1.1535 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.1291 | |
| 96 | S | H | -1.1234 | |
| 97 | E | H | -1.2158 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.4452 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1872 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | L | H | -0.0770 | |
| 108 | Q | H | -0.3837 | |
| 109 | Y | H | 0.5793 | |
| 114 | G | H | 0.2085 | |
| 115 | G | H | 0.0000 | |
| 116 | G | H | -0.1382 | |
| 117 | Y | H | -0.0945 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3740 | |
| 121 | G | H | -0.7843 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1160 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | 0.0023 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5782 | |
| 128 | S | H | -0.7044 | |
| 1 | D | L | -2.2319 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2717 | |
| 4 | M | L | 0.0000 | |
| 5 | N | L | -1.9222 | |
| 6 | Q | L | -1.3439 | |
| 7 | S | L | -0.7478 | |
| 8 | P | L | -0.7225 | |
| 9 | S | L | -0.9022 | |
| 10 | S | L | -1.0799 | |
| 11 | L | L | -0.8686 | |
| 12 | S | L | -1.2363 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.7773 | |
| 15 | L | L | 0.1397 | |
| 16 | G | L | -0.5597 | |
| 17 | D | L | -0.7959 | |
| 18 | T | L | -0.4559 | |
| 19 | I | L | 0.0000 | |
| 20 | T | L | -0.1957 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8380 | |
| 23 | C | L | 0.0000 | |
| 24 | H | L | -2.0664 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.0211 | |
| 27 | Q | L | -2.2991 | |
| 28 | N | L | -2.1062 | |
| 29 | I | L | 0.0000 | |
| 36 | N | L | -1.2829 | |
| 37 | I | L | -0.2617 | |
| 38 | W | L | 0.0334 | |
| 39 | L | L | 0.0000 | |
| 40 | T | L | 0.0514 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -1.0426 | |
| 45 | K | L | -1.2775 | |
| 46 | P | L | -0.8585 | |
| 47 | G | L | -1.1820 | |
| 48 | N | L | -1.7466 | |
| 49 | I | L | -0.9396 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.3220 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.0367 | |
| 56 | K | L | -0.3121 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5367 | |
| 66 | N | L | -0.4558 | |
| 67 | L | L | 0.1347 | |
| 68 | P | L | 0.1383 | |
| 69 | T | L | -0.2092 | |
| 70 | G | L | -0.3381 | |
| 71 | V | L | -0.1180 | |
| 72 | P | L | -0.2305 | |
| 74 | S | L | -0.3563 | |
| 75 | R | L | -0.6331 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4356 | |
| 78 | G | L | -0.4748 | |
| 79 | S | L | -0.8486 | |
| 80 | G | L | -1.1172 | |
| 83 | S | L | -1.2496 | |
| 84 | G | L | -1.5609 | |
| 85 | T | L | -1.9052 | |
| 86 | R | L | -2.6048 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7568 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.2777 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -0.7524 | |
| 93 | S | L | -0.7076 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9550 | |
| 96 | P | L | -0.9668 | |
| 97 | E | L | -1.1777 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.3454 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.8565 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | -0.2668 | |
| 108 | Q | L | -0.5588 | |
| 109 | S | L | -0.1548 | |
| 114 | Y | L | 0.4603 | |
| 115 | P | L | 0.0000 | |
| 116 | R | L | -0.5247 | |
| 117 | T | L | -0.8131 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.2872 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.6391 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.7588 | |
| 126 | I | L | -1.0809 | |
| 127 | K | L | -1.7127 |