Project name: f96763bffaeaf5e

Status: done

Started: 2024-06-16 16:13:40
Settings
Chain sequence(s) H: EVQLVVSGGGLVKPGGSMILSCAASGFTFSNYSMNWVRQAPGKGLEWVSSISSSSEYIYYADFVKGRFTISRDNAKNSLYLQMDSLRAEDTAVYYCAWPGYRKAWGRGTLVTVSS
L: QSVLTQPASVSGSPGQSITISCAGTSSDVGGYNYVSWYQQHPGKAPKLMIYEDSKRPSGVSNRFSGSKSGNTASLTISGLRAEDEADYYCSYCASKGHWLFGGGTKLAVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-2.5867
Maximal score value
1.6604
Average score
-0.5192
Total score value
-116.8124

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.7251
2 V H -0.5953
3 Q H -0.6595
4 L H 0.0000
5 V H 0.4126
6 V H 0.0912
7 S H 0.0456
8 G H 0.1412
9 G H 0.7654
11 G H 1.1125
12 L H 1.3956
13 V H -0.1998
14 K H -1.7993
15 P H -1.9695
16 G H -1.4803
17 G H -1.3162
18 S H -0.7210
19 M H 0.4975
20 I H 1.4270
21 L H 0.0000
22 S H 0.4412
23 C H 0.0000
24 A H -0.1549
25 A H -0.3131
26 S H -0.4673
27 G H -0.7636
28 F H -0.3648
29 T H -0.5260
30 F H 0.0000
35 S H -1.2165
36 N H -1.2798
37 Y H -0.4612
38 S H -0.0262
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6433
45 A H -1.0050
46 P H -0.7978
47 G H -1.4747
48 K H -2.2708
49 G H -1.5197
50 L H 0.0000
51 E H -0.8318
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 S H 0.0000
56 I H 0.0000
57 S H 0.0000
58 S H -0.7948
59 S H -0.8646
62 S H -0.6540
63 E H -1.0880
64 Y H 0.8825
65 I H 1.1330
66 Y H 0.5312
67 Y H -0.6116
68 A H 0.0000
69 D H -2.2739
70 F H -1.2388
71 V H 0.0000
72 K H -2.3372
74 G H -1.6749
75 R H -1.3027
76 F H 0.0000
77 T H -0.2895
78 I H 0.0000
79 S H -0.1511
80 R H -0.8974
81 D H -1.4731
82 N H -1.7275
83 A H -1.3630
84 K H -2.2527
85 N H -1.6680
86 S H -0.9499
87 L H 0.0000
88 Y H 0.4736
89 L H 0.0000
90 Q H 0.1194
91 M H 0.0000
92 D H -1.1348
93 S H -1.3456
94 L H 0.0000
95 R H -2.3842
96 A H -1.7682
97 E H -2.1459
98 D H 0.0000
99 T H -0.3078
100 A H 0.0000
101 V H 0.7309
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 W H 0.0000
107 P H -0.1725
108 G H 0.0050
114 Y H -0.0321
115 R H -0.8785
116 K H 0.0000
117 A H -0.5789
118 W H -0.6266
119 G H 0.0000
120 R H -1.8917
121 G H -0.5745
122 T H 0.3517
123 L H 1.6604
124 V H 0.0000
125 T H 0.2463
126 V H 0.0000
127 S H -0.6675
128 S H -0.6025
1 Q L -0.9536
2 S L 0.1440
3 V L 1.2125
4 L L 0.0000
5 T L 0.1223
6 Q L -0.2284
7 P L -0.3511
8 A L -0.4189
9 S L -0.5013
11 V L -0.0312
12 S L 0.0390
13 G L 0.0000
14 S L -0.1597
15 P L -1.0023
16 G L -1.5680
17 Q L -1.6435
18 S L -1.1238
19 I L -0.2438
20 T L -0.0455
21 I L 0.0000
22 S L -0.2348
23 C L 0.0000
24 A L -0.3435
25 G L -0.3433
26 T L -0.6366
27 S L -0.8518
28 S L -0.7646
29 D L 0.0000
30 V L 0.0000
31 G L -1.2533
35 G L -0.7521
36 Y L -0.5047
37 N L -1.2918
38 Y L -0.0776
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 H L -1.8046
46 P L -1.3547
47 G L -1.4703
48 K L -2.5867
49 A L -1.7436
50 P L 0.0000
51 K L -1.5796
52 L L 0.0000
53 M L 0.0000
54 I L 0.0000
55 Y L -1.2879
56 E L -1.9476
57 D L 0.0000
65 S L -1.7437
66 K L -2.4480
67 R L -2.3007
68 P L 0.0000
69 S L -1.0933
70 G L -0.7848
71 V L -1.0251
72 S L -1.0066
74 N L -1.6774
75 R L -0.9919
76 F L 0.0000
77 S L -1.0131
78 G L 0.0000
79 S L -1.0577
80 K L -1.1683
83 S L -0.9784
84 G L -1.3039
85 N L -1.5445
86 T L -0.9807
87 A L 0.0000
88 S L -0.3507
89 L L 0.0000
90 T L -0.1841
91 I L 0.0000
92 S L -1.0972
93 G L -1.2632
94 L L 0.0000
95 R L -2.3790
96 A L -1.5261
97 E L -2.5212
98 D L 0.0000
99 E L -1.6566
100 A L 0.0000
101 D L -1.1598
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 S L 0.0000
106 Y L 0.0000
107 C L -0.0874
108 A L 0.0000
109 S L -1.0410
113 K L -1.6624
114 G L -0.4028
115 H L -0.4175
116 W L -0.0524
117 L L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.5400
121 G L -0.9341
122 T L 0.0000
123 K L -1.1399
124 L L 0.0000
125 A L 0.0322
126 V L -0.0633
127 L L 1.1773
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Laboratory of Theory of Biopolymers 2018