| Chain sequence(s) |
A: IQLTQSPSSLAVSVGEKITMSCKSSQSLLYSGNQKNYLAWYQQKSGQSPKLLIYWTSTRKSGVPDRFTGSGSGTDFTLTISSVKAEDLAIYYCHQYYTYPWTFGGGTKLEIGGGGSGGGGSGGGGSVQLQQSGPELVKPGASVKMSCKASGYIFTDYYMKWVKQSHGRSLEWIGDINLNNGDTFYNQKFKGRATLTVDKSSSTAYMQLNSLTSEDSAVYYCARSDDYDYGMDYWGQGTTVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | DR227A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -2.42239 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:03:37)
[INFO] FoldX: Starting FoldX energy minimalization (00:04:16)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:04)
[INFO] Main: Simulation completed successfully. (00:06:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | I | A | -0.3011 | |
| 3 | Q | A | -1.5499 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -1.2850 | |
| 6 | Q | A | -0.9932 | |
| 7 | S | A | -0.8032 | |
| 8 | P | A | -0.5334 | |
| 9 | S | A | -0.6657 | |
| 10 | S | A | -0.7540 | |
| 11 | L | A | -0.4301 | |
| 12 | A | A | -0.4836 | |
| 13 | V | A | 0.0000 | |
| 14 | S | A | -1.2922 | |
| 15 | V | A | -1.6185 | |
| 16 | G | A | -1.7411 | |
| 17 | E | A | -2.2235 | |
| 18 | K | A | -2.4691 | |
| 19 | I | A | 0.0000 | |
| 20 | T | A | -0.4738 | |
| 21 | M | A | 0.0000 | |
| 22 | S | A | -0.9478 | |
| 23 | C | A | 0.0000 | |
| 24 | K | A | -2.5970 | |
| 25 | S | A | 0.0000 | |
| 26 | S | A | -1.5299 | |
| 27 | Q | A | -1.6145 | |
| 28 | S | A | -0.6940 | |
| 29 | L | A | 0.0000 | |
| 30 | L | A | 0.0156 | |
| 31 | Y | A | 0.1388 | |
| 32 | S | A | -0.6430 | |
| 33 | G | A | -0.9823 | |
| 34 | N | A | -1.4472 | |
| 35 | Q | A | -1.7758 | |
| 36 | K | A | -1.4150 | |
| 37 | N | A | -0.4271 | |
| 38 | Y | A | 0.3524 | |
| 39 | L | A | 0.0000 | |
| 40 | A | A | 0.0000 | |
| 41 | W | A | 0.0000 | |
| 42 | Y | A | 0.0000 | |
| 43 | Q | A | 0.0000 | |
| 44 | Q | A | 0.0000 | |
| 45 | K | A | -1.4237 | |
| 46 | S | A | -0.8954 | |
| 47 | G | A | -1.4192 | |
| 48 | Q | A | -2.0944 | |
| 49 | S | A | -1.5077 | |
| 50 | P | A | 0.0000 | |
| 51 | K | A | -1.4462 | |
| 52 | L | A | 0.0000 | |
| 53 | L | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | Y | A | -0.1337 | |
| 56 | W | A | -0.1844 | |
| 57 | T | A | 0.0000 | |
| 58 | S | A | -0.5329 | |
| 59 | T | A | -0.6553 | |
| 60 | R | A | -1.3881 | |
| 61 | K | A | -1.1305 | |
| 62 | S | A | -0.7627 | |
| 63 | G | A | -1.1746 | |
| 64 | V | A | -1.0166 | |
| 65 | P | A | -1.2765 | |
| 66 | D | A | -2.1449 | |
| 67 | R | A | -1.4328 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7798 | |
| 70 | G | A | 0.0000 | |
| 71 | S | A | -0.6163 | |
| 72 | G | A | -1.1077 | |
| 73 | S | A | -1.1536 | |
| 74 | G | A | -1.0169 | |
| 75 | T | A | -1.6266 | |
| 76 | D | A | -2.3766 | |
| 77 | F | A | 0.0000 | |
| 78 | T | A | -0.8008 | |
| 79 | L | A | 0.0000 | |
| 80 | T | A | -0.5063 | |
| 81 | I | A | 0.0000 | |
| 82 | S | A | -1.5166 | |
| 83 | S | A | -1.4646 | |
| 84 | V | A | 0.0000 | |
| 85 | K | A | -1.7052 | |
| 86 | A | A | -1.2433 | |
| 87 | E | A | -1.8570 | |
| 88 | D | A | 0.0000 | |
| 89 | L | A | -0.6002 | |
| 90 | A | A | 0.0000 | |
| 91 | I | A | -0.2504 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | H | A | 0.0000 | |
| 96 | Q | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | 0.9782 | |
| 99 | T | A | 0.6989 | |
| 100 | Y | A | 1.0273 | |
| 101 | P | A | 0.2886 | |
| 102 | W | A | 0.0000 | |
| 103 | T | A | -0.1565 | |
| 104 | F | A | 0.0000 | |
| 105 | G | A | 0.0000 | |
| 106 | G | A | -1.3314 | |
| 107 | G | A | 0.0000 | |
| 108 | T | A | 0.0000 | |
| 109 | K | A | -1.0632 | |
| 110 | L | A | 0.0000 | |
| 111 | E | A | -1.0913 | |
| 112 | I | A | -1.0481 | |
| 113 | G | A | -0.8648 | |
| 114 | G | A | -1.1310 | |
| 115 | G | A | -1.3412 | |
| 116 | G | A | -1.1640 | |
| 117 | S | A | -1.1063 | |
| 118 | G | A | -1.2111 | |
| 119 | G | A | -1.2061 | |
| 120 | G | A | -1.0641 | |
| 121 | G | A | -1.2216 | |
| 122 | S | A | -0.8624 | |
| 123 | G | A | -1.1040 | |
| 124 | G | A | -1.1538 | |
| 125 | G | A | -1.1031 | |
| 126 | G | A | -1.1381 | |
| 127 | S | A | -0.8311 | |
| 128 | V | A | -0.4083 | |
| 129 | Q | A | -1.5453 | |
| 130 | L | A | 0.0000 | |
| 131 | Q | A | -1.6642 | |
| 132 | Q | A | 0.0000 | |
| 133 | S | A | -1.0405 | |
| 134 | G | A | -0.9316 | |
| 135 | P | A | -0.3557 | |
| 136 | E | A | -0.1733 | |
| 137 | L | A | 0.9054 | |
| 138 | V | A | -0.2428 | |
| 139 | K | A | -1.6577 | |
| 140 | P | A | -1.4742 | |
| 141 | G | A | -1.2309 | |
| 142 | A | A | -1.0291 | |
| 143 | S | A | -1.3183 | |
| 144 | V | A | 0.0000 | |
| 145 | K | A | -2.1241 | |
| 146 | M | A | 0.0000 | |
| 147 | S | A | -0.8365 | |
| 148 | C | A | 0.0000 | |
| 149 | K | A | -1.3378 | |
| 150 | A | A | 0.0000 | |
| 151 | S | A | -0.5151 | |
| 152 | G | A | -0.2745 | |
| 153 | Y | A | 0.5662 | |
| 154 | I | A | 1.5160 | |
| 155 | F | A | 0.0000 | |
| 156 | T | A | -1.4434 | |
| 157 | D | A | -1.9001 | |
| 158 | Y | A | 0.0000 | |
| 159 | Y | A | -1.1041 | |
| 160 | M | A | 0.0000 | |
| 161 | K | A | 0.0000 | |
| 162 | W | A | 0.0000 | |
| 163 | V | A | 0.0000 | |
| 164 | K | A | -0.5539 | |
| 165 | Q | A | -0.9575 | |
| 166 | S | A | -1.5002 | |
| 167 | H | A | -1.7279 | |
| 168 | G | A | -1.9601 | |
| 169 | R | A | -2.6352 | |
| 170 | S | A | -1.6025 | |
| 171 | L | A | 0.0000 | |
| 172 | E | A | -1.1180 | |
| 173 | W | A | 0.0000 | |
| 174 | I | A | 0.0000 | |
| 175 | G | A | 0.0000 | |
| 176 | D | A | 0.0000 | |
| 177 | I | A | 0.0000 | |
| 178 | N | A | -1.6918 | |
| 179 | L | A | 0.0000 | |
| 180 | N | A | -3.0252 | |
| 181 | N | A | -2.9430 | |
| 182 | G | A | -2.3784 | |
| 183 | D | A | -2.3052 | |
| 184 | T | A | -0.6457 | |
| 185 | F | A | 0.3370 | |
| 186 | Y | A | -0.4463 | |
| 187 | N | A | -1.3309 | |
| 188 | Q | A | -2.5292 | |
| 189 | K | A | -2.9683 | |
| 190 | F | A | 0.0000 | |
| 191 | K | A | -2.8141 | |
| 192 | G | A | -2.1326 | |
| 193 | R | A | -1.9876 | |
| 194 | A | A | 0.0000 | |
| 195 | T | A | -1.0166 | |
| 196 | L | A | 0.0000 | |
| 197 | T | A | -0.6442 | |
| 198 | V | A | -1.2339 | |
| 199 | D | A | -1.6621 | |
| 200 | K | A | -2.4681 | |
| 201 | S | A | -1.2388 | |
| 202 | S | A | -1.0410 | |
| 203 | S | A | -0.8340 | |
| 204 | T | A | 0.0000 | |
| 205 | A | A | 0.0000 | |
| 206 | Y | A | -0.5477 | |
| 207 | M | A | 0.0000 | |
| 208 | Q | A | -1.6458 | |
| 209 | L | A | 0.0000 | |
| 210 | N | A | -1.4612 | |
| 211 | S | A | -1.1131 | |
| 212 | L | A | 0.0000 | |
| 213 | T | A | -1.3433 | |
| 214 | S | A | -1.4657 | |
| 215 | E | A | -1.9583 | |
| 216 | D | A | 0.0000 | |
| 217 | S | A | -0.5935 | |
| 218 | A | A | -0.4680 | |
| 219 | V | A | -0.0919 | |
| 220 | Y | A | 0.0000 | |
| 221 | Y | A | 0.0000 | |
| 222 | C | A | 0.0000 | |
| 223 | A | A | 0.0000 | |
| 224 | R | A | 0.0000 | |
| 225 | S | A | 0.0000 | |
| 226 | D | A | 0.0000 | |
| 227 | R | A | -1.5225 | mutated: DR227A |
| 228 | Y | A | 0.2151 | |
| 229 | D | A | -0.4024 | |
| 230 | Y | A | -0.0402 | |
| 231 | G | A | 0.0000 | |
| 232 | M | A | 0.0000 | |
| 233 | D | A | 0.0000 | |
| 234 | Y | A | -0.3337 | |
| 235 | W | A | 0.0000 | |
| 236 | G | A | 0.0000 | |
| 237 | Q | A | -1.8198 | |
| 238 | G | A | -0.9827 | |
| 239 | T | A | 0.0000 | |
| 240 | T | A | -0.1816 | |
| 241 | V | A | 0.0000 | |
| 242 | T | A | -0.1679 | |
| 243 | V | A | 0.0000 | |
| 244 | S | A | -0.5159 |