Project name: query_structure

Status: done

Started: 2026-03-16 20:31:08
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWDIDEQRDWFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGIEYTVSIYGVYHVYRSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-4.2557
Maximal score value
2.0208
Average score
-0.8646
Total score value
-78.6794

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.4250
2 P A -0.9077
3 A A -1.2462
4 P A 0.0000
5 K A -2.2425
6 N A -1.8706
7 L A -0.4915
8 V A 0.5815
9 V A 0.4138
10 S A -0.7387
11 R A -2.0019
12 V A -0.9963
13 T A -1.7664
14 E A -2.9740
15 D A -2.6483
16 S A -2.0517
17 A A 0.0000
18 R A -1.2796
19 L A 0.0000
20 S A -0.6937
21 W A 0.0000
22 D A -2.2878
23 I A -2.9545
24 D A -3.8469
25 E A -4.2557
26 Q A -3.6642
27 R A -3.9830
28 D A -3.6960
29 W A -1.9233
30 F A 0.0000
31 D A -2.0105
32 S A -1.5137
33 F A 0.0000
34 L A 0.4452
35 I A 0.0000
36 Q A 0.8277
37 Y A 0.5056
38 Q A -0.6750
39 E A -1.6680
40 S A -1.4586
41 E A -2.3281
42 K A -1.8787
43 V A 0.0295
44 G A -0.9186
45 E A -1.5083
46 A A -0.1820
47 I A 1.0788
48 V A 2.0208
49 L A 1.3598
50 T A 0.4891
51 V A 0.0000
52 P A -1.1318
53 G A 0.0000
54 S A -1.6076
55 E A -1.7127
56 R A -1.1800
57 S A -0.8437
58 Y A -0.7103
59 D A -1.6511
60 L A 0.0000
61 T A -1.4296
62 G A -1.4837
63 L A 0.0000
64 K A -2.9063
65 P A -2.4194
66 G A -1.6944
67 I A -1.9301
68 E A -1.8133
69 Y A 0.0000
70 T A 0.0403
71 V A 0.0000
72 S A 0.0000
73 I A 0.0000
74 Y A 0.0000
75 G A 0.0000
76 V A -0.2744
77 Y A -0.2221
78 H A -0.2066
79 V A 1.4464
80 Y A 1.2774
81 R A -0.9218
82 S A 0.0000
83 N A -1.5534
84 P A -1.0491
85 L A -0.6001
86 S A 0.0679
87 A A 1.1052
88 I A 1.7548
89 F A 0.0000
90 T A -0.7267
91 T A -1.8180
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018