Project name: best_og

Status: done

Started: 2024-06-11 15:54:37
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Chain sequence(s) A: FGKRPTDLALSVILVFMLPTLLPSGRLKNIANLKNYDGDLKDKVPYKGIVISLVLVPELKPTLNVQLCSTILNVAFPPEVIGPLFFFPLLYM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-3.6991
Maximal score value
3.9227
Average score
0.1044
Total score value
9.6056

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.0402
2 G A -0.9311
3 K A -2.7203
4 R A -3.1429
5 P A -1.8050
6 T A -1.4349
7 D A -2.1286
8 L A -0.6480
9 A A 0.0000
10 L A 1.3402
11 S A 1.1972
12 V A 1.7917
13 I A 2.1926
14 L A 2.9149
15 V A 2.7498
16 F A 3.1052
17 M A 2.5615
18 L A 2.6700
19 P A 1.7521
20 T A 1.4941
21 L A 2.5221
22 L A 1.5674
23 P A 0.2401
24 S A -0.2682
25 G A -1.0923
26 R A -1.6855
27 L A 0.0211
28 K A -1.8494
29 N A -1.2141
30 I A 0.5237
31 A A -0.7262
32 N A -1.5310
33 L A -0.4179
34 K A -1.9933
35 N A -2.1999
36 Y A -1.1159
37 D A -2.7128
38 G A -2.9222
39 D A -3.3326
40 L A -2.3964
41 K A -3.6194
42 D A -3.6991
43 K A -2.3938
44 V A 0.0000
45 P A -0.9816
46 Y A -0.2671
47 K A -0.8932
48 G A 0.3237
49 I A 1.3708
50 V A 2.7922
51 I A 2.8879
52 S A 2.2768
53 L A 2.8298
54 V A 3.9227
55 L A 3.2504
56 V A 1.3044
57 P A -0.1675
58 E A -1.8041
59 L A -1.0979
60 K A -2.2503
61 P A -1.5023
62 T A -1.0609
63 L A 0.0000
64 N A -1.4646
65 V A -0.7497
66 Q A -1.3164
67 L A -0.7443
68 C A 0.0282
69 S A 0.0165
70 T A -0.5172
71 I A -0.0040
72 L A 0.0000
73 N A -0.5046
74 V A 0.0106
75 A A 0.0042
76 F A -0.2359
77 P A -0.8283
78 P A -1.0450
79 E A -1.8730
80 V A -0.5712
81 I A 0.1973
82 G A -0.1412
83 P A 0.5386
84 L A 1.5196
85 F A 2.9027
86 F A 3.5044
87 F A 2.9840
88 P A 2.4260
89 L A 3.5416
90 L A 3.6894
91 Y A 3.1464
92 M A 2.4546
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Laboratory of Theory of Biopolymers 2018