Project name: INF3 Aggrescan3D

Status: done

Started: 2026-07-22 12:24:04
Settings
Chain sequence(s) A: GLFRAIRGFIRNGWRGMRRGWYC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-2.7192
Maximal score value
1.9487
Average score
-0.3749
Total score value
-8.6228

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.6180
2 L A 1.9487
3 F A 1.8309
4 R A -0.4924
5 A A 0.4489
6 I A 1.6381
7 R A -0.6762
8 G A -1.1016
9 F A 0.3118
10 I A 0.9288
11 R A -1.4521
12 N A -1.8827
13 G A -0.5245
14 W A -0.3504
15 R A -2.7192
16 G A -2.2720
17 M A -1.4259
18 R A -2.2562
19 R A -2.4683
20 G A -1.1543
21 W A 0.5362
22 Y A 1.0812
23 C A 0.8104
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018