Project name: faac8904739b655

Status: done

Started: 2026-06-16 21:21:12
Settings
Chain sequence(s) A: GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEIHSLNVLEGSWVLYELSNYRGREYLLMPGDYRRYQDWGATNARVGSLRRVIDFS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:17)
Show buried residues

Minimal score value
-4.6524
Maximal score value
1.5618
Average score
-1.1993
Total score value
-207.4843

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.5315
2 K A -2.5345
3 I A 0.0000
4 T A 0.0000
5 L A 0.0000
6 Y A -2.0878
7 E A 0.0000
8 D A -2.7114
9 R A -2.6151
10 G A -1.7701
11 F A -1.8081
12 Q A -2.5720
13 G A -2.6275
14 R A -2.7444
15 H A -2.3234
16 Y A -1.4009
17 E A -2.3102
18 C A -1.5530
19 S A -1.4291
20 S A -1.3856
21 D A -1.5834
22 H A 0.0000
23 P A -1.5337
24 N A -1.5238
25 L A 0.0000
26 Q A -1.7083
27 P A -0.5520
28 Y A -0.4616
29 L A 0.0000
30 S A -1.4336
31 R A -2.1174
32 C A 0.0000
33 N A 0.0000
34 S A 0.0000
35 A A 0.0000
36 R A -2.8530
37 V A 0.0000
38 D A -3.1137
39 S A -1.7014
40 G A -1.0071
41 C A 0.0000
42 W A 0.0000
43 M A 0.0000
44 L A 0.0000
45 Y A 0.0000
46 E A -1.1061
47 Q A -1.5599
48 P A -1.5940
49 N A -1.6278
50 Y A -1.0154
51 S A -0.8732
52 G A -0.8401
53 L A -0.0719
54 Q A -0.1318
55 Y A 0.0000
56 F A 0.1399
57 L A 0.0000
58 R A -1.1753
59 R A -2.0535
60 G A -2.2852
61 D A -2.9079
62 Y A -2.0410
63 A A -2.0220
64 D A -2.1511
65 H A -1.7240
66 Q A -1.8349
67 Q A -2.0204
68 W A 0.0000
69 M A -0.6378
70 G A -0.6036
71 L A 0.3231
72 S A -0.6871
73 D A -2.0351
74 S A -1.4639
75 V A 0.0000
76 R A -1.6579
77 S A 0.0000
78 C A 0.0000
79 R A -0.9806
80 L A -0.6921
81 I A 0.0000
82 P A -0.6576
83 H A -0.9381
84 S A -1.0581
85 G A -0.8706
86 S A -1.3495
87 H A 0.0000
88 R A -2.5465
89 I A 0.0000
90 R A -1.2236
91 L A 0.0000
92 Y A -1.7429
93 E A 0.0000
94 R A -4.0607
95 E A -4.3667
96 D A -3.5261
97 Y A -2.7956
98 R A -3.4422
99 G A -2.4722
100 Q A -1.7108
101 M A -0.5716
102 I A -0.6982
103 E A -1.8052
104 F A 0.0000
105 T A -2.2972
106 E A -2.8554
107 D A -2.0686
108 C A 0.0000
109 S A -1.2537
110 C A -1.2071
111 L A 0.0000
112 Q A -2.6156
113 D A -3.1814
114 R A -3.1296
115 F A 0.0000
116 R A -3.0830
117 F A -1.9793
118 N A -2.0604
119 E A -2.1398
120 I A 0.0000
121 H A -3.2162
122 S A 0.0000
123 L A 0.0000
124 N A -1.5932
125 V A 0.0000
126 L A -1.1553
127 E A -1.7755
128 G A -1.2614
129 S A 0.0000
130 W A 0.0000
131 V A 0.0000
132 L A 0.0000
133 Y A 0.0000
134 E A -1.3243
135 L A -0.8038
136 S A -0.9415
137 N A -1.6772
138 Y A -1.4247
139 R A -2.1350
140 G A -1.1969
141 R A -1.0357
142 E A 0.0000
143 Y A 0.0495
144 L A 0.3086
145 L A 0.0000
146 M A -0.0496
147 P A -0.8420
148 G A -1.4264
149 D A -2.6898
150 Y A -3.0859
151 R A -4.6524
152 R A -4.5493
153 Y A -2.8057
154 Q A -2.9985
155 D A -3.4396
156 W A 0.0000
157 G A -1.8424
158 A A 0.0000
159 T A -0.8582
160 N A -1.3520
161 A A -1.5829
162 R A -1.5993
163 V A 0.0000
164 G A 0.0000
165 S A 0.0000
166 L A 0.0000
167 R A -1.3706
168 R A -1.4224
169 V A 0.0000
170 I A 0.1025
171 D A 0.3013
172 F A 1.5618
173 S A 0.3312
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018