Project name: query_structure

Status: done

Started: 2026-03-16 19:55:57
Settings
Chain sequence(s) A: APGQCNHGRCPSGLCCSQYGYCGTGPAYCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:08)
Show buried residues

Minimal score value
-2.7158
Maximal score value
1.0281
Average score
-0.3882
Total score value
-11.6456

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.4727
2 P A -0.6214
3 G A -0.5617
4 Q A -1.4186
5 C A -1.6931
6 N A -2.6816
7 H A -2.5120
8 G A -2.1237
9 R A -2.7158
10 C A 0.0000
11 P A -0.7990
12 S A -0.6134
13 G A -0.2264
14 L A 0.4839
15 C A 0.5173
16 C A 0.1315
17 S A 0.0000
18 Q A -0.1372
19 Y A 0.9707
20 G A -0.1014
21 Y A 0.5249
22 C A 0.1368
23 G A 0.0000
24 T A 0.3336
25 G A 0.1653
26 P A -0.0452
27 A A 0.3203
28 Y A 1.0281
29 C A 0.6757
30 G A -0.2105
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018