Project name: Y32T

Status: done

Started: 2025-12-22 05:05:20
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAVSGLSLTSNSVNWIRQAPGKGLEWVGLIWSNGDTDYNSAIKSRFTISRDTSKSTVYLQMNSLRAEDTAVYYCAREYYGYFDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCLASEGISSTLAWYQQKPGKAPKLLIYGANSLQTGVPSRFSGSGSATDYTLTISSLQPEDFATYYCQQSYKFPNTFGQGTKVEVK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-2.5985
Maximal score value
1.6723
Average score
-0.5022
Total score value
-111.9925

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0695
2 V H -1.1292
3 Q H -1.2206
4 L H 0.0000
5 V H 0.8366
6 E H 0.0000
7 S H -0.1966
8 G H -0.7044
9 G H 0.1348
11 G H 0.7758
12 L H 1.4003
13 V H -0.0656
14 Q H -1.3574
15 P H -1.6112
16 G H -1.3933
17 G H -1.1197
18 S H -0.9693
19 L H -0.6491
20 R H -1.5674
21 L H 0.0000
22 S H -0.2844
23 C H 0.0000
24 A H -0.0751
25 V H 0.0000
26 S H -0.9541
27 G H -1.1766
28 L H -0.5334
29 S H -0.2625
30 L H 0.0000
35 T H -0.5665
36 S H -0.4954
37 N H -0.2585
38 S H 0.0000
39 V H 0.0000
40 N H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6014
45 A H -1.0114
46 P H -0.8165
47 G H -1.4724
48 K H -2.3647
49 G H -1.6222
50 L H 0.0000
51 E H -1.0302
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 L H 0.0000
56 I H 0.0000
57 W H -0.7479
58 S H -0.9979
59 N H -1.7799
63 G H -1.6528
64 D H -2.1750
65 T H -1.1757
66 D H -0.8813
67 Y H -0.5448
68 N H 0.0000
69 S H -0.7888
70 A H -0.4459
71 I H 0.0000
72 K H -1.5543
74 S H -1.0530
75 R H -1.0456
76 F H 0.0000
77 T H -0.7926
78 I H 0.0000
79 S H -0.6175
80 R H -0.8354
81 D H -1.1142
82 T H -1.0327
83 S H -1.2242
84 K H -2.0168
85 S H -1.1711
86 T H -0.6569
87 V H 0.0000
88 Y H -0.4864
89 L H 0.0000
90 Q H -1.0474
91 M H 0.0000
92 N H -1.1977
93 S H -1.1601
94 L H 0.0000
95 R H -2.4101
96 A H -1.7542
97 E H -2.2814
98 D H 0.0000
99 T H -0.3810
100 A H 0.0000
101 V H 0.7829
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0666
107 E H 0.3771
108 Y H 0.9448
109 Y H 1.4676
113 G H 0.6833
114 Y H 0.0000
115 F H 0.0000
116 D H 0.0000
117 Y H 0.3606
118 W H -0.2439
119 G H 0.0000
120 Q H -1.3894
121 G H -0.2660
122 T H 0.5681
123 L H 1.6723
124 V H 0.0000
125 T H 0.3566
126 V H 0.0000
127 S H -0.7437
128 S H -0.6895
1 D L -2.2814
2 I L 0.0000
3 Q L -1.8301
4 M L 0.0000
5 T L -0.5851
6 Q L 0.0000
7 S L -0.4389
8 P L -0.5928
9 S L -0.8304
10 S L -1.0202
11 L L -0.6494
12 S L -0.9087
13 A L 0.0000
14 S L -0.2907
15 V L 0.5981
16 G L -0.6180
17 D L -1.3428
18 R L -2.1519
19 V L 0.0000
20 T L -0.6058
21 I L 0.0000
22 T L -0.2468
23 C L 0.0000
24 L L -0.2213
25 A L 0.0000
26 S L -1.1929
27 E L -1.3126
28 G L -0.6238
29 I L 0.0000
36 S L -0.4463
37 S L -0.6056
38 T L -0.0549
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8990
44 Q L 0.0000
45 K L -1.7562
46 P L -1.3114
47 G L -1.6539
48 K L -2.5985
49 A L -1.5645
50 P L 0.0000
51 K L -1.2645
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1185
56 G L -0.3303
57 A L 0.0000
65 N L -1.3712
66 S L -0.4457
67 L L 0.0650
68 Q L -0.2359
69 T L -0.2298
70 G L -0.4955
71 V L 0.0000
72 P L -0.3811
74 S L -0.4255
75 R L -0.8132
76 F L 0.0000
77 S L -0.6030
78 G L -0.7629
79 S L -1.0928
80 G L -1.0849
83 S L -0.9661
84 A L -0.6508
85 T L -0.8214
86 D L -1.2542
87 Y L 0.0000
88 T L -0.5892
89 L L 0.0000
90 T L -0.6295
91 I L 0.0000
92 S L -1.3250
93 S L -1.0487
94 L L 0.0000
95 Q L -0.5988
96 P L -0.7854
97 E L -1.7669
98 D L 0.0000
99 F L -0.6243
100 A L 0.0000
101 T L -1.0257
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.3204
108 Y L 0.3162
109 K L -0.9123
114 F L -0.1157
115 P L -0.3816
116 N L 0.0000
117 T L -0.7962
118 F L 0.0000
119 G L 0.0000
120 Q L -1.7988
121 G L 0.0000
122 T L 0.0000
123 K L -1.7300
124 V L 0.0000
125 E L -1.3133
126 V L 0.4232
127 K L -1.0235
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018