Project name: 17.P2E12.pdb

Status: done

Started: 2026-03-19 12:36:28
Settings
Chain sequence(s) H: QVQLVESGGGLVQAGGSLRLSCAVSGIDFSISTVVWYRQAPGKQRDWVATIARVGSTSYANSVKGRFTVSRDNVKNTAYLQMNSLKAEDTALYYCNTPPLIARDYWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.1043
Maximal score value
2.0545
Average score
-0.6314
Total score value
-73.2433

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3367
2 V H -0.7773
3 Q H -0.7492
4 L H 0.0000
5 V H 0.3315
6 E H 0.0000
7 S H -0.5562
8 G H -0.9072
9 G H -0.5138
11 G H 0.2628
12 L H 1.1746
13 V H 0.0503
14 Q H -1.2523
15 A H -1.6820
16 G H -1.3890
17 G H -1.1182
18 S H -1.1030
19 L H -0.7276
20 R H -1.5303
21 L H 0.0000
22 S H -0.2909
23 C H 0.0000
24 A H -0.2349
25 V H 0.0000
26 S H -0.9782
27 G H -1.0767
28 I H -0.5364
29 D H -0.9406
30 F H 0.0000
35 S H -0.1450
36 I H 1.3371
37 S H 0.0000
38 T H 0.0857
39 V H 0.0000
40 V H 0.2218
41 W H 0.0000
42 Y H -0.2103
43 R H -1.1966
44 Q H -1.9452
45 A H -1.9050
46 P H -1.2431
47 G H -1.7767
48 K H -3.1043
49 Q H -3.0488
50 R H -2.5687
51 D H -2.4286
52 W H -0.6085
53 V H 0.0000
54 A H 0.0000
55 T H -0.1356
56 I H 0.0000
57 A H -0.2379
58 R H -0.7479
59 V H 0.9197
63 G H -0.4769
64 S H -0.2552
65 T H -0.2437
66 S H -0.5248
67 Y H -0.7711
68 A H -1.1952
69 N H -1.9940
70 S H -1.5609
71 V H 0.0000
72 K H -2.4798
74 G H -1.7084
75 R H -1.6742
76 F H 0.0000
77 T H -0.7701
78 V H 0.0000
79 S H -0.5803
80 R H -1.3367
81 D H -1.7277
82 N H -1.9249
83 V H -0.0958
84 K H -1.7994
85 N H -1.6747
86 T H -0.9850
87 A H 0.0000
88 Y H -0.3105
89 L H 0.0000
90 Q H -0.8913
91 M H 0.0000
92 N H -1.2900
93 S H -1.2635
94 L H 0.0000
95 K H -2.6486
96 A H -1.8710
97 E H -2.3631
98 D H 0.0000
99 T H -0.8453
100 A H 0.0000
101 L H -0.2684
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 N H 0.0000
106 T H 0.0000
107 P H -0.2057
108 P H 0.6137
109 L H 1.7943
113 I H 2.0545
114 A H 0.2898
115 R H -1.4432
116 D H -1.3747
117 Y H -0.6584
118 W H -0.0822
119 G H -0.1732
120 Q H -0.9591
121 G H 0.0000
122 T H -0.5913
123 Q H -0.5488
124 V H 0.0000
125 T H -0.1731
126 V H 0.0000
127 S H -0.7569
128 S H -0.8793
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018