Project name: Lad-GGGGSGGGGS-Cutinase

Status: done

Started: 2025-06-30 19:23:07
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGGGGSGGGGSGLPTSNPAQELEARQLGRTTRDDLINGNSASCADVIFIYARGSTETGNLGTLGPSIASNLESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAPHLAYGPDARGPAPEFLIEKVRAVRGSA
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:54)
Show buried residues

Minimal score value
-3.6774
Maximal score value
1.2293
Average score
-0.6619
Total score value
-441.5156

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6334
2 V A -0.6292
3 Q A -0.4955
4 L A 0.0000
5 V A -0.0972
6 Q A 0.0000
7 S A -0.4982
8 G A -0.8364
9 A A -0.7458
10 E A -1.1622
11 V A -0.6704
12 K A -1.5988
13 K A -2.5523
14 P A -2.3894
15 G A -1.9965
16 A A -1.5898
17 S A -1.6753
18 V A 0.0000
19 K A -1.8278
20 V A 0.0000
21 S A -0.5418
22 C A 0.0000
23 K A -0.3869
24 A A 0.0000
25 S A -0.8543
26 G A -0.7985
27 L A -0.7142
28 T A -0.9635
29 I A 0.0000
30 E A -2.8199
31 D A -2.6194
32 Y A -1.3147
33 Y A -0.6874
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5949
40 A A -0.9879
41 P A -0.9938
42 G A -1.2123
43 Q A -1.7332
44 G A -1.1037
45 L A 0.0000
46 E A -0.6647
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A 0.0000
51 I A 0.0000
52 D A -2.2438
53 P A 0.0000
54 E A -3.6774
55 N A -3.0188
56 G A -2.4980
57 D A -2.6989
58 T A -1.3765
59 E A -0.9932
60 Y A -0.7231
61 G A 0.0000
62 P A -1.6149
63 K A -2.2401
64 F A 0.0000
65 Q A -2.1277
66 G A -1.6505
67 R A -1.6785
68 V A 0.0000
69 T A -0.7800
70 M A 0.0000
71 T A -0.8087
72 R A -1.4798
73 D A -1.0987
74 T A -0.9383
75 S A 0.0294
76 I A 0.7002
77 N A -0.2980
78 T A 0.0000
79 A A 0.0000
80 Y A -0.6880
81 M A 0.0000
82 E A -1.2147
83 L A 0.0000
84 S A -1.7822
85 R A -2.7293
86 L A 0.0000
87 R A -3.3743
88 S A -2.3231
89 D A -2.5325
90 D A 0.0000
91 T A -0.9705
92 A A 0.0000
93 V A 0.2058
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A -0.3515
101 A A -0.4069
102 H A -0.7404
103 Y A 0.3858
104 G A 0.0507
105 T A 0.0000
106 W A 0.2762
107 F A 0.0000
108 A A 0.0226
109 Y A 0.1035
110 W A -0.1594
111 G A 0.0000
112 Q A -1.2679
113 G A -0.5534
114 T A 0.0000
115 L A -0.0633
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.1710
120 S A -0.9476
121 A A -0.5933
122 S A -0.6637
123 T A -0.8069
124 K A -1.1432
125 G A -1.1274
126 P A 0.0000
127 S A -0.3620
128 V A 0.0000
129 F A 0.0000
130 P A -1.1905
131 L A 0.0000
132 A A -1.2610
133 P A 0.0000
134 S A -0.8899
135 S A -0.5398
136 K A -0.9693
137 S A 0.0000
138 T A -0.6700
139 S A -0.6947
140 G A -0.7989
141 G A -0.8664
142 T A -0.6081
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3259
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4054
156 P A -0.6285
157 V A -0.4647
158 T A -0.3986
159 V A -0.0385
160 S A 0.0084
161 W A 0.0000
162 N A -0.4066
163 S A -0.0894
164 G A 0.0000
165 A A -0.0701
166 L A 0.1599
167 T A -0.0058
168 S A -0.2092
169 G A -0.1491
170 V A 0.2208
171 H A -0.2778
172 T A 0.0418
173 F A 0.0000
174 P A -0.3105
175 A A 0.2835
176 V A 0.5565
177 L A 1.2293
178 Q A 0.3212
179 S A -0.0524
180 S A -0.1970
181 G A 0.0534
182 L A 0.1725
183 Y A 0.5123
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1174
191 V A 0.0000
192 P A -0.6138
193 S A -0.5706
194 S A -0.5848
195 S A -0.5739
196 L A -0.7964
197 G A -0.9606
198 T A -0.6903
199 Q A -1.1983
200 T A -1.1146
201 Y A 0.0000
202 I A -0.9243
203 C A 0.0000
204 N A -0.7231
205 V A 0.0000
206 N A -1.4675
207 H A 0.0000
208 K A -2.7740
209 P A -1.6862
210 S A -1.6861
211 N A -2.4329
212 T A -1.5375
213 K A -1.4738
214 V A -0.5417
215 D A -1.2046
216 K A -1.5335
217 K A -2.0506
218 V A 0.0000
219 E A -2.8030
220 P A -1.7626
221 K A -2.1690
222 S A -1.1083
223 C A -0.3826
224 G A -0.7571
225 G A -0.9226
226 G A -1.1063
227 G A -1.2006
228 S A -1.0452
229 G A -1.1940
230 G A -1.2017
231 G A -1.1993
232 G A -0.9287
233 S A -0.4603
234 G A -0.2232
235 L A 0.9249
236 P A -0.0849
237 T A -0.4765
238 S A -0.8688
239 N A -1.8458
240 P A -0.7515
241 A A -0.8735
242 Q A -1.5910
243 E A -2.3485
244 L A -1.6227
245 E A -2.7163
246 A A -1.8301
247 R A -1.2749
248 Q A -1.4975
249 L A 0.2052
250 G A 0.0000
251 R A -1.8262
252 T A -0.9334
253 T A -0.9368
254 R A -0.7026
255 D A -0.5993
256 D A -0.7394
257 L A 0.0000
258 I A 0.3130
259 N A -1.1470
260 G A -1.0779
261 N A -1.5676
262 S A -1.0927
263 A A -0.5548
264 S A -0.9976
265 C A -1.2278
266 A A 0.0000
267 D A -2.1496
268 V A 0.0000
269 I A 0.0000
270 F A 0.0000
271 I A 0.0000
272 Y A 0.0000
273 A A 0.0000
274 R A 0.0000
275 G A 0.0000
276 S A 0.0000
277 T A -1.2893
278 E A 0.0000
279 T A -1.2739
280 G A -1.0331
281 N A 0.0000
282 L A 0.0000
283 G A 0.0000
284 T A -0.1360
285 L A 0.0000
286 G A 0.0000
287 P A -0.7067
288 S A -0.8918
289 I A 0.0000
290 A A 0.0000
291 S A -0.9878
292 N A -1.2311
293 L A 0.0000
294 E A 0.0000
295 S A -0.7075
296 A A -0.5233
297 F A -0.8248
298 G A -1.5509
299 K A -2.6336
300 D A -2.8189
301 G A 0.0000
302 V A 0.0000
303 W A -0.9565
304 I A 0.0000
305 Q A 0.0000
306 G A 0.0000
307 V A 0.0000
308 G A -0.9031
309 G A -0.9621
310 A A -1.2173
311 Y A 0.0000
312 R A -1.9081
313 A A 0.0000
314 T A -0.9091
315 L A -0.8190
316 G A -0.4353
317 D A -0.3514
318 N A 0.0000
319 A A 0.0354
320 L A 0.4109
321 P A 0.1182
322 R A -0.1524
323 G A 0.0000
324 T A 0.0000
325 S A -0.6195
326 S A -0.7869
327 A A -1.0961
328 A A 0.0000
329 I A 0.0000
330 R A -2.3411
331 E A -1.6668
332 M A 0.0000
333 L A -1.6434
334 G A -1.2769
335 L A 0.0000
336 F A 0.0000
337 Q A -1.6149
338 Q A -0.8483
339 A A 0.0000
340 N A -1.3541
341 T A -1.0619
342 K A -1.1082
343 C A 0.0000
344 P A -1.6750
345 D A -2.3272
346 A A 0.0000
347 T A 0.0000
348 L A 0.0000
349 I A 0.0000
350 A A 0.0000
351 G A 0.0000
352 G A 0.0000
353 Y A 0.0000
354 S A 0.0000
355 Q A 0.0000
356 G A 0.0000
357 A A 0.0000
358 A A 0.0000
359 L A 0.0000
360 A A 0.0000
361 A A 0.0000
362 A A 0.0000
363 S A 0.0000
364 I A 0.0000
365 E A -2.2770
366 D A -2.9728
367 L A 0.0000
368 D A -2.7522
369 S A -2.1434
370 A A -1.3070
371 I A 0.0000
372 R A 0.0000
373 D A -2.3201
374 K A -1.4350
375 I A 0.0000
376 A A 0.0000
377 G A 0.0000
378 T A 0.0000
379 V A 0.0000
380 L A 0.0000
381 F A 0.0000
382 G A 0.0000
383 Y A 0.0000
384 T A 0.0000
385 K A 0.0000
386 N A -0.8259
387 L A -0.4796
388 Q A -0.8574
389 N A -1.7237
390 R A -2.3433
391 G A -1.6298
392 R A -2.6378
393 I A 0.0000
394 P A -1.8740
395 N A -2.0707
396 Y A 0.0000
397 P A -1.5634
398 A A -1.6482
399 D A -2.3091
400 R A -1.6006
401 T A -1.2863
402 K A -0.8930
403 V A -0.1312
404 F A 0.0000
405 C A 0.0795
406 N A -0.1661
407 T A -0.3162
408 G A -0.3481
409 D A 0.0000
410 L A 0.6841
411 V A 0.0000
412 C A 0.0000
413 T A 0.1353
414 G A 0.2192
415 S A 0.1242
416 L A 0.0193
417 I A 0.2026
418 V A 0.0582
419 A A 0.4431
420 A A 0.3518
421 P A 0.1625
422 H A 0.0000
423 L A 0.7324
424 A A 0.2739
425 Y A 0.0000
426 G A -0.6057
427 P A -1.0709
428 D A -1.2476
429 A A 0.0000
430 R A -2.4667
431 G A -1.7050
432 P A -1.2789
433 A A 0.0000
434 P A 0.0000
435 E A -2.5688
436 F A -1.5139
437 L A 0.0000
438 I A -1.4452
439 E A -2.2360
440 K A -1.4922
441 V A 0.0000
442 R A -0.8556
443 A A -0.2307
444 V A 0.7841
445 R A -0.4955
446 G A -0.6246
447 S A -0.5938
448 A A -0.3145
1 D B -1.3080
2 V B 0.0000
3 V B 0.6864
4 M B 0.0000
5 T B -0.3939
6 Q B 0.0000
7 S B -0.1826
8 P B 0.3690
9 L B 1.1269
10 S B 0.1877
11 L B -0.0924
12 P B -0.6960
13 V B 0.0000
14 T B -0.9617
15 L B -0.6794
16 G B -1.2164
17 Q B -1.4931
18 P B -1.7148
19 A B 0.0000
20 S B -0.7884
21 I B 0.0000
22 S B -0.9054
23 C B 0.0000
24 R B -2.2959
25 S B 0.0000
26 S B -0.9994
27 Q B -1.4986
28 S B -0.8228
29 L B 0.0000
30 L B 0.7839
31 H B -0.1057
32 S B -0.3566
33 S B -0.5078
34 G B -0.5147
35 N B -0.4283
36 T B 0.0429
37 Y B 0.1612
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.8083
45 P B -1.4705
46 G B -1.5780
47 Q B -1.9600
48 S B -1.3575
49 P B 0.0000
50 R B -1.4405
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1564
55 K B -0.4546
56 I B -0.3664
57 S B -0.5664
58 T B -0.6949
59 R B -1.5039
60 F B 0.0000
61 S B -0.6441
62 G B -0.8780
63 V B -1.0076
64 P B -1.2679
65 D B -2.3815
66 R B -2.1117
67 F B 0.0000
68 S B -1.3269
69 G B 0.0000
70 S B -0.8122
71 G B -0.9706
72 S B -0.6365
73 G B -0.6339
74 T B -1.4294
75 D B -2.0857
76 F B 0.0000
77 T B -1.0702
78 L B 0.0000
79 K B -1.8978
80 I B 0.0000
81 S B -2.2239
82 R B -2.8782
83 V B 0.0000
84 E B -2.2234
85 A B -1.9370
86 E B -2.1556
87 D B 0.0000
88 V B 0.0000
89 G B 0.0000
90 V B -0.2158
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.0046
99 V B 0.7359
100 P B -0.0696
101 Y B 0.3941
102 T B 0.1302
103 F B 0.0000
104 G B 0.0000
105 G B -0.3865
106 G B 0.0000
107 T B 0.0000
108 K B -0.6469
109 V B 0.0000
110 E B -1.1492
111 I B 0.0000
112 K B -1.1562
113 R B -0.7901
114 T B -0.0922
115 V B 0.2197
116 A B -0.0503
117 A B -0.1047
118 P B 0.0000
119 S B -0.2023
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.6639
125 P B 0.0000
126 S B -1.6669
127 D B -2.9126
128 E B -2.5878
129 Q B 0.0000
130 L B -2.1847
131 K B -2.7324
132 S B -1.6951
133 G B -1.2159
134 T B -0.9199
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.7526
144 F B 0.0000
145 Y B -1.0266
146 P B -1.6176
147 R B -2.9154
148 E B -3.1341
149 A B -2.2133
150 K B -2.2859
151 V B -1.0491
152 Q B -0.7045
153 W B 0.0000
154 K B -0.5262
155 V B 0.0000
156 D B -1.9233
157 N B -1.5118
158 A B -0.2540
159 L B 0.6633
160 Q B -0.3317
161 S B -0.6667
162 G B -1.2498
163 N B -1.5404
164 S B -1.3949
165 Q B -1.3167
166 E B -1.5084
167 S B -0.8350
168 V B -0.7899
169 T B -1.1794
170 E B -2.3629
171 Q B 0.0000
172 D B -2.0045
173 S B -2.2677
174 K B -2.6025
175 D B -1.7605
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6601
184 L B 0.0000
185 T B -0.5856
186 L B -0.7101
187 S B -0.9062
188 K B -1.9138
189 A B -1.6997
190 D B -2.1796
191 Y B 0.0000
192 E B -3.4497
193 K B -3.5316
194 H B -2.9537
195 K B -3.2664
196 V B -1.4285
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.6595
201 V B 0.0000
202 T B -1.1510
203 H B 0.0000
204 Q B -1.7483
205 G B -0.4530
206 L B -0.2491
207 S B -0.4501
208 S B -0.4021
209 P B -0.5283
210 V B 0.1074
211 T B -0.3781
212 K B -0.7591
213 S B -0.6301
214 F B 0.0000
215 N B -1.7512
216 R B -2.3811
217 G B -1.8502
218 E B -2.0276
219 C B -0.7863
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Laboratory of Theory of Biopolymers 2018