| Chain sequence(s) |
A: HSQGTFTSDYSKYLDSRRAQDFAQWAMNT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | TR29A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.218012 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:12)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:20)
[INFO] Main: Simulation completed successfully. (00:00:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | A | -1.6085 | |
| 2 | S | A | -1.3914 | |
| 3 | Q | A | -1.4813 | |
| 4 | G | A | -0.8608 | |
| 5 | T | A | -0.1573 | |
| 6 | F | A | 1.1451 | |
| 7 | T | A | 0.0167 | |
| 8 | S | A | -0.6188 | |
| 9 | D | A | -1.1414 | |
| 10 | Y | A | -0.0962 | |
| 11 | S | A | -0.8820 | |
| 12 | K | A | -2.2892 | |
| 13 | Y | A | -1.1586 | |
| 14 | L | A | -1.6785 | |
| 15 | D | A | -3.1771 | |
| 16 | S | A | -2.6860 | |
| 17 | R | A | -3.5524 | |
| 18 | R | A | -3.3057 | |
| 19 | A | A | -2.1482 | |
| 20 | Q | A | -2.4173 | |
| 21 | D | A | -1.8445 | |
| 22 | F | A | 0.6317 | |
| 23 | A | A | -0.0051 | |
| 24 | Q | A | -0.3502 | |
| 25 | W | A | 1.0667 | |
| 26 | A | A | 0.8445 | |
| 27 | M | A | 0.3922 | |
| 28 | N | A | -1.3135 | |
| 29 | R | A | -2.0622 | mutated: TR29A |