Project name: obj1 [mutate: LG45C, WL47C, EM46C, PR41C]

Status: done

Started: 2025-02-10 14:56:06
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LG45C,EM46C,WL47C,PR41C
Energy difference between WT (input) and mutated protein (by FoldX) 5.05298 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:25)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:11)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.3173
Maximal score value
1.7519
Average score
-0.6949
Total score value
-83.3902

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0068
2 V C -0.9006
3 Q C -1.2218
4 L C 0.0000
5 V C 0.5875
6 E C 0.2434
7 S C -0.4096
8 G C -0.8147
9 G C 0.0115
10 G C 0.9274
11 L C 1.4457
12 V C -0.0349
13 Q C -1.3361
14 P C -1.4880
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9629
19 R C -2.1461
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2017
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2524
29 F C 0.0000
30 R C -2.0330
31 S C -0.8870
32 Y C -1.2169
33 E C -1.1328
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -1.2063
40 A C -1.9959
41 R C -2.9174 mutated: PR41C
42 G C -2.4149
43 K C -2.9151
44 G C -1.9683
45 G C -0.8774 mutated: LG45C
46 M C 0.0186 mutated: EM46C
47 L C 0.9074 mutated: WL47C
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5397
53 G C -1.2461
54 S C -1.2292
55 G C -1.0822
56 G C -0.7347
57 S C -0.2413
58 T C 0.3438
59 Y C 0.9171
60 Y C -0.1101
61 A C -0.8085
62 D C -2.3002
63 S C -1.7025
64 V C 0.0000
65 K C -2.3314
66 G C -1.6109
67 R C 0.0000
68 F C 0.0000
69 T C -0.6340
70 I C 0.0000
71 S C -0.5624
72 R C -1.3627
73 D C -1.9805
74 N C -2.1902
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6695
81 L C 0.0000
82 Q C -1.2336
83 M C 0.0000
84 N C -1.3326
85 S C -1.2322
86 L C 0.0000
87 R C -2.4694
88 A C -1.8849
89 E C -2.5231
90 D C 0.0000
91 T C 0.0000
92 A C 0.0000
93 I C 0.5573
94 Y C 0.0000
95 Y C 0.5072
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1758
101 D C -3.3173
102 G C -2.0536
103 F C -1.1322
104 N C -2.3963
105 K C -3.1646
106 G C -1.8863
107 F C -0.9355
108 D C -1.0681
109 Y C -0.1448
110 W C 0.6965
111 G C 0.0052
112 Q C -0.8412
113 G C 0.1235
114 T C 0.5876
115 L C 1.7519
116 V C 0.0000
117 T C 0.3493
118 V C 0.0000
119 S C -0.7725
120 S C -1.0588
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Laboratory of Theory of Biopolymers 2018