Project name: query_structure

Status: done

Started: 2026-03-16 22:52:32
Settings
Chain sequence(s) A: ACSGRGSRCPPQCCMGLRCGRGNPQKCIGAHEDV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-3.1399
Maximal score value
0.7858
Average score
-1.3885
Total score value
-47.2084

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.0674
2 C A 0.1177
3 S A 0.0000
4 G A -1.4795
5 R A -2.4401
6 G A -1.9504
7 S A -1.9429
8 R A -3.1186
9 C A -1.7507
10 P A -1.0834
11 P A -0.8801
12 Q A -1.4203
13 C A -1.1739
14 C A 0.1621
15 M A 0.7858
16 G A -0.3678
17 L A -0.9772
18 R A -2.2670
19 C A -2.1190
20 G A -2.2739
21 R A -3.0095
22 G A -2.5125
23 N A -2.4549
24 P A -2.1551
25 Q A -2.6086
26 K A -3.1399
27 C A 0.0000
28 I A -1.2193
29 G A 0.0000
30 A A -1.3218
31 H A -1.8368
32 E A -1.6030
33 D A -1.6915
34 V A 0.4563
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018